YangLab / CLEARLinks
direct comparison of circular and linear RNA expression
☆22Updated 4 years ago
Alternatives and similar repositories for CLEAR
Users that are interested in CLEAR are comparing it to the libraries listed below
Sorting:
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆23Updated 2 years ago
- Tutorial Website☆59Updated 4 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆20Updated 5 years ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Updated last year
- An R interface to the MEME Suite☆52Updated 2 months ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- A continually expanding collection of RNA-seq tools☆51Updated 10 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Estimation of Promoter Activity from RNA-Seq data☆53Updated last month
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆28Updated last year
- ☆15Updated 3 years ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆54Updated 3 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆25Updated last year
- ☆20Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- REDItools are python scripts to investigate RNA editing at genomic scale.☆68Updated last month
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆50Updated last month
- ☆38Updated 5 years ago
- Demultiplexes a fastq.☆46Updated 4 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A list of alternative splicing analysis resources☆46Updated 5 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆37Updated 3 years ago