direct comparison of circular and linear RNA expression
☆24Jan 17, 2021Updated 5 years ago
Alternatives and similar repositories for CLEAR
Users that are interested in CLEAR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- circular RNA analysis toolset☆91Sep 8, 2024Updated 2 years ago
- circular RNA quantification tools☆32Jun 17, 2024Updated 2 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆22Oct 4, 2025Updated last year
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Jun 17, 2020Updated 6 years ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- microRNA PREdiction From small RNA-seq data☆32Dec 28, 2017Updated 8 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 6 years ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆24Apr 24, 2017Updated 9 years ago
- tools to find circRNAs in RNA-seq data☆48Nov 16, 2017Updated 8 years ago
- ☆11Aug 30, 2021Updated 5 years ago
- Publication Page for the Noack et al. 2021 Nature Neuroscience paper☆10Feb 7, 2022Updated 4 years ago
- Circular RNA Identification for Nanopore Sequencing☆23May 23, 2024Updated 2 years ago
- ☆20Jun 8, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆11Mar 19, 2026Updated 7 months ago
- A combined strategy to identify circular RNAs (circRNAs and ciRNAs) (Zhang et al., Complementary Sequence-Mediated Exon Circularization, …☆62Jun 1, 2019Updated 7 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Code for "High-throughput and high-sensitivity full-length single-cell RNA-seq analysis on third-generation sequencing platform" paper. P…☆10Jun 21, 2024Updated 2 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆29Feb 4, 2023Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 5 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- A legacy repository. Was replaced by distiller, cooler, and cooltools.☆21Mar 4, 2020Updated 6 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11Sep 21, 2026Updated last month
- Simplify functional enrichment results☆128Jan 30, 2026Updated 9 months ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 4 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- An analysis pipeline for Nanopore direct-RNA sequencing☆15Jul 24, 2025Updated last year
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 3 years ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- ☆34Dec 2, 2021Updated 4 years ago
- ☆14Apr 22, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- Altered TCR Ligand Affinities and Structures☆13Dec 1, 2023Updated 2 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆15Jun 9, 2026Updated 4 months ago
- CircAST is a computational tool for circular RNA full-length assembly and quantification using RNA-Seq data.☆10Jun 17, 2021Updated 5 years ago
- A quickstart tool for AmpliconArchitect. Enables all steps (alignment, CNV calling, seed interval detection) prior to running AmpliconArc…☆89Oct 20, 2026Updated last week
- Nanopore 3' end-capture sequencing (Begik et al., Nat Methods 2022)☆16Aug 18, 2026Updated 2 months ago
- A collection of perl scripts for NGS analysis☆17Oct 2, 2024Updated 2 years ago