YangLab / CLEAR
direct comparison of circular and linear RNA expression
☆21Updated 4 years ago
Alternatives and similar repositories for CLEAR:
Users that are interested in CLEAR are comparing it to the libraries listed below
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Fork of the Polysolver project☆31Updated 5 years ago
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆24Updated 8 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- ☆38Updated 5 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- documentation for trackViewer☆29Updated 5 years ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ATAC-seq processing pipeline☆32Updated 2 years ago
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA☆13Updated 7 years ago
- ☆15Updated 2 years ago
- Demultiplexes a fastq.☆44Updated 4 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- A list of alternative splicing analysis resources☆43Updated last week
- tools to find circRNAs in RNA-seq data☆42Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq☆16Updated last week
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated 2 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Motif Scan and Enrichment Analysis (MoSEA)☆16Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Tutorial Website☆57Updated 4 years ago
- simplified cellranger for long-read data☆18Updated 6 months ago
- A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications☆31Updated 3 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year