direct comparison of circular and linear RNA expression
☆24Jan 17, 2021Updated 5 years ago
Alternatives and similar repositories for CLEAR
Users that are interested in CLEAR are comparing it to the libraries listed below
Sorting:
- circular RNA quantification tools☆31Jun 17, 2024Updated last year
- circular RNA analysis toolset☆88Sep 8, 2024Updated last year
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Oct 4, 2025Updated 4 months ago
- Full-length linear and circular transcript isoform reconstruction and quantification☆11Jun 17, 2024Updated last year
- Circular RNA Identification for Nanopore Sequencing☆22May 23, 2024Updated last year
- microRNA PREdiction From small RNA-seq data☆31Dec 28, 2017Updated 8 years ago
- MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data☆22Apr 24, 2017Updated 8 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Aug 4, 2022Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- ☆12May 8, 2025Updated 9 months ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 2 years ago
- ☆13Apr 22, 2021Updated 4 years ago
- Process m6A/MeRIP-seq data in a single or batch job mode☆21Apr 28, 2020Updated 5 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- tools to find circRNAs in RNA-seq data☆45Nov 16, 2017Updated 8 years ago
- a tool to detect differentially expressed circular RNA☆13Nov 12, 2025Updated 3 months ago
- Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data☆13May 8, 2020Updated 5 years ago
- CircSplice☆12Feb 27, 2019Updated 7 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆14Nov 13, 2025Updated 3 months ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 3 years ago
- a machine learning model to identify nucleotide features determining RNA subcellular localization☆13Mar 11, 2023Updated 2 years ago
- Simplify functional enrichment results☆124Jan 30, 2026Updated last month
- ☆32Dec 2, 2021Updated 4 years ago
- scOpen: single-cell open chromatin analysis via NMF modelling☆27Feb 4, 2023Updated 3 years ago
- Nanopore 3' end-capture sequencing (Begik et al., bioRxiv 2021)☆14Jul 7, 2025Updated 7 months ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated last year
- An analysis pipeline for Nanopore direct-RNA sequencing☆13Jul 24, 2025Updated 7 months ago
- circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line dri…☆30Dec 19, 2023Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Aug 14, 2018Updated 7 years ago
- Peak calling for 4C data☆13May 4, 2018Updated 7 years ago
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆15Oct 5, 2022Updated 3 years ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated last year
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 2 years ago
- Software to study why most genes are ignored☆15Sep 18, 2018Updated 7 years ago
- ☆16Nov 25, 2019Updated 6 years ago
- ☆18Oct 22, 2024Updated last year