YangLab / CLEARLinks
direct comparison of circular and linear RNA expression
☆23Updated 5 years ago
Alternatives and similar repositories for CLEAR
Users that are interested in CLEAR are comparing it to the libraries listed below
Sorting:
- Identifying genome-wide translated open reading frames using ribosome profiling☆24Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Tutorial Website☆63Updated 5 years ago
- RAGE-seq scripts☆18Updated 4 years ago
- Fork of the Polysolver project☆33Updated 6 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A list of alternative splicing analysis resources☆47Updated 10 months ago
- ☆38Updated 5 years ago
- tools to find circRNAs in RNA-seq data☆45Updated 8 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆64Updated 2 weeks ago
- RNA editing quantification in deep transcriptome data☆16Updated 6 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- ATAC-seq processing pipeline☆34Updated 3 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆36Updated last year
- single-cell-Isoform-Sequencing-Analysis-Tools: New and powerful tools brings single-cell RNA sequencing to the Isoform level and single m…☆26Updated last year
- RNA editing tests☆17Updated 5 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15Updated 10 years ago
- A Python3-base pipeline for translated circular RNA(circRNA) identification☆19Updated 4 months ago
- Motif manipulation functions for R.☆30Updated 4 months ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆50Updated 5 months ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆84Updated 4 years ago
- Circular RNA Identification for Nanopore Sequencing☆22Updated last year
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- A comprehensive, accurate and efficient solution for analysis of large scale base-resolution DNA methylation data☆17Updated 4 years ago
- DCC uses output from the STAR read mapper to systematically detect back-splice junctions in next-generation sequencing data. DCC applies …☆38Updated 3 years ago