AnabelSMRuggiero / sbmltoodepyLinks
A tool for creating Python implementations of SBML models.
☆14Updated 3 years ago
Alternatives and similar repositories for sbmltoodepy
Users that are interested in sbmltoodepy are comparing it to the libraries listed below
Sorting:
- Python package for building SBML models without needing to use libSBML.☆10Updated 4 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated 2 weeks ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 2 months ago
- COMBINE-compliant implementation of the Mycoplasma genitalium whole-cell model☆10Updated 9 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- A repository to practice contributing to a Manubot manuscript☆47Updated 4 months ago
- A Python toolbox for COPASI☆13Updated last year
- The mwtab package is a Python library that facilitates reading and writing files in mwTab format used by the Metabolomics Workbench for a…☆12Updated this week
- web based visualisation of molecular interaction data☆12Updated 4 months ago
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆52Updated last week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- A collaborative review of the emerging COVID-19 literature. Join the chat here:☆118Updated last year
- ☆17Updated last year
- Boolean Network Modeling☆40Updated 5 years ago
- API providing access to papers and authors scraped from biorxiv.org☆57Updated 2 years ago
- Markdown version of Cytoscape manual☆12Updated last week
- Plos in Computational Biology paper related with github for researchers, code, source and document☆59Updated 9 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated last month
- The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks☆27Updated this week
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆12Updated last year
- Introduction to the Unix Shell for biologists☆21Updated 3 years ago
- does the magical pdf-to-pdf conversion popular in academic journal submission sites and does it faster than they do☆31Updated 6 years ago
- research software encyclopedia database☆14Updated last week
- S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects☆12Updated 5 months ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last month
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated last year
- High level functionality to support and simplify metabolomics data annotation.☆16Updated 4 months ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated 2 years ago