COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
☆128Jun 5, 2026Updated last week
Alternatives and similar repositories for COPASI
Users that are interested in COPASI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 6 months ago
- A simplified python interface to COPASI.☆28Mar 19, 2026Updated 2 months ago
- Python Environment for Modeling and Simulating Biological Systems☆142Apr 10, 2026Updated 2 months ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆567Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Rule-based modeling framework☆68Jun 2, 2026Updated last week
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 3 years ago
- libRoadRunner: A high-performance SBML simulator☆62Mar 26, 2026Updated 2 months ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Apr 4, 2018Updated 8 years ago
- A Python toolbox for COPASI☆13Jun 5, 2024Updated 2 years ago
- The BiGG Models website server☆90Nov 7, 2019Updated 6 years ago
- A Python Framework for Modeling and Analysis of Signaling Systems☆29May 25, 2026Updated 2 weeks ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- The generic genome-scale metabolic model of Homo sapiens☆162Mar 30, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Virtual Cell Framework☆125Jun 5, 2026Updated last week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated this week
- Please use opencobra/escher for current Escher development. That repository is the preferred home for the latest community-maintained ver…☆236May 12, 2026Updated 3 weeks ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆33Apr 14, 2026Updated last month
- Python package for stochastic simulations☆18Jun 1, 2026Updated last week
- Various scripts for quantum chemistry (mainly ORCA)☆15Feb 6, 2025Updated last year
- Computation of Microbial Ecosystems in Time and Space☆28May 5, 2026Updated last month
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆56May 27, 2026Updated 2 weeks ago
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Dec 15, 2025Updated 5 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Modular cloning simulation with the MoClo framework in Python☆12May 3, 2022Updated 4 years ago
- A collection of M models downloaded from published studies☆17Feb 18, 2016Updated 10 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- High-performance sensitivity analysis for large ordinary differential equation models☆139Updated this week
- AstraZeneca add-ons to Orange.☆23Jun 15, 2020Updated 5 years ago
- Scripts for the EEGLAB tutorial☆11Feb 7, 2025Updated last year
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆128Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python utilities for SBML☆41Apr 23, 2026Updated last month
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- MATLAB SimBiology-Based Platform for QSP Immune Oncology Models☆11Jan 8, 2021Updated 5 years ago
- Constraint-Based Reconstruction and EXascale Analysis☆46Oct 23, 2024Updated last year
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 3 years ago
- Open source genome-scale metabolic models of human and model animals☆27May 5, 2026Updated last month
- A modular compiler for biological chemical reaction networks☆52May 10, 2026Updated last month