Alternatives and similar repositories for COPASI:

Users that are interested in COPASI are comparing it to the libraries listed below

• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆110Updated 2 weeks ago
• virtualcell / vcell
  Virtual Cell Framework
  ☆74Updated this week
• SBRG / bigg_models
  The BiGG Models website server
  ☆81Updated 5 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆61Updated 4 months ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆43Updated this week
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆20Updated this week
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆19Updated 5 months ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆36Updated 6 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆23Updated last year
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆22Updated 3 months ago
• SysBioChalmers / Human-GEM
  The generic genome-scale metabolic model of Homo sapiens
  ☆104Updated this week
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆174Updated 3 months ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆62Updated 2 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated last year
• SBRG / MASSpy
  ☆22Updated 2 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 2 weeks ago
• SBRG / ssbio
  A Python framework for structural systems biology
  ☆107Updated 4 years ago
• SysBioInra / RBApy
  Python package for creating, calibrating and simulating RBA models
  ☆11Updated last year
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated 5 months ago
• opencobra / COBRA.tutorials
  Repository of tutorials for The COBRA Toolbox
  ☆19Updated 3 months ago
• zhanglab / psamm
  Curation and analysis of metabolic models
  ☆34Updated last year
• SysBioChalmers / yeast-GEM
  The consensus GEM for Saccharomyces cerevisiae
  ☆98Updated 2 months ago
• cdanielmachado / framed
  framed: a metabolic modeling package for python
  ☆26Updated 5 years ago
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆23Updated 11 months ago
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆51Updated this week
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆54Updated last year
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated last year
• SynBioDex / pySBOL
  SWIG-Python wrappers implementing SBOL 2.2
  ☆25Updated 3 years ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆40Updated 2 weeks ago