COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
☆125Mar 13, 2026Updated 3 weeks ago
Alternatives and similar repositories for COPASI
Users that are interested in COPASI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Dec 3, 2025Updated 4 months ago
- A simplified python interface to COPASI.☆25Mar 19, 2026Updated 3 weeks ago
- Python Environment for Modeling and Simulating Biological Systems☆136Dec 5, 2025Updated 4 months ago
- COBRApy is a package for constraint-based modeling of metabolic networks.☆556Mar 26, 2026Updated 2 weeks ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Rule-based modeling framework☆67Updated this week
- High-level, high-performance, constraint-based reconstruction and analysis in Julia☆63Apr 26, 2023Updated 2 years ago
- libRoadRunner: A high-performance SBML simulator☆57Mar 26, 2026Updated 2 weeks ago
- This is a short response to the 2018 RFI on NIH Strategic Plan for Data Science☆16Apr 4, 2018Updated 8 years ago
- The BiGG Models website server☆89Nov 7, 2019Updated 6 years ago
- ☆20Apr 4, 2026Updated last week
- A Python Framework for Modeling and Analysis of Signaling Systems☆29Mar 16, 2026Updated 3 weeks ago
- Mass Action Stoichiometric Simulation (MASS) Toolbox☆12Aug 1, 2017Updated 8 years ago
- The generic genome-scale metabolic model of Homo sapiens☆134Mar 30, 2026Updated last week
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated this week
- Virtual Cell Framework☆116Updated this week
- ☆16Dec 26, 2022Updated 3 years ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆32Mar 31, 2026Updated last week
- Python package for stochastic simulations☆18Updated this week
- Computation of Microbial Ecosystems in Time and Space☆26Feb 26, 2026Updated last month
- LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…☆56Mar 12, 2026Updated last month
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Dec 15, 2025Updated 3 months ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Modular cloning simulation with the MoClo framework in Python☆12May 3, 2022Updated 3 years ago
- A collection of M models downloaded from published studies☆17Feb 18, 2016Updated 10 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- High-performance sensitivity analysis for large ordinary differential equation models☆136Mar 31, 2026Updated last week
- AstraZeneca add-ons to Orange.☆23Jun 15, 2020Updated 5 years ago
- Python framework for Systems Biology modeling☆195Mar 30, 2026Updated last week
- The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.☆125Mar 25, 2026Updated 2 weeks ago
- Python utilities for SBML☆41Mar 28, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- The aim of this repository is to maintain, refine, and expand the AGORA collection of genome-scale metabolic reconstructions for human gu…☆25Dec 10, 2020Updated 5 years ago
- MATLAB SimBiology-Based Platform for QSP Immune Oncology Models☆11Jan 8, 2021Updated 5 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- Open source genome-scale metabolic models of human and model animals☆27Feb 11, 2026Updated 2 months ago
- A modular compiler for biological chemical reaction networks☆51Dec 8, 2025Updated 4 months ago
- The standard for open-source GEMs on GitHub☆21Oct 26, 2023Updated 2 years ago
- Python package for creating, calibrating and simulating RBA models☆13Updated this week