High-performance sensitivity analysis for large ordinary differential equation models
☆136Mar 31, 2026Updated last week
Alternatives and similar repositories for AMICI
Users that are interested in AMICI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆63Mar 27, 2026Updated 2 weeks ago
- Python package for working with PEtab files☆16Mar 31, 2026Updated last week
- python Parameter EStimation TOolbox☆269Apr 4, 2026Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆32Mar 31, 2026Updated last week
- Model selection for PEtab☆14Mar 30, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Mar 2, 2020Updated 6 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Dec 3, 2025Updated 4 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated last month
- a modeling environment tailored to parameter estimation in dynamical systems☆65Feb 18, 2026Updated last month
- Python framework for Systems Biology modeling☆195Mar 30, 2026Updated last week
- libRoadRunner: A high-performance SBML simulator☆57Mar 26, 2026Updated 2 weeks ago
- R Interface to CVODE/CVODES/IDA functions in the SUNDIALS ODE solving C library☆11Apr 3, 2026Updated last week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Python wrapper around KINSOL (from the sundials library)☆10Nov 24, 2025Updated 4 months ago
- Rule-based modeling framework☆67Updated this week
- The ODES scikit for ordinary differential and algebraic equations, an extension to scipy☆131Jan 12, 2025Updated last year
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- ☆19Apr 4, 2026Updated last week
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆11May 16, 2023Updated 2 years ago
- Python Environment for Modeling and Simulating Biological Systems☆136Dec 5, 2025Updated 4 months ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated 3 weeks ago
- Methods for profile likelihood analysis.☆18Nov 4, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Python wrapper around cvodes (from the sundials library)☆35Sep 9, 2025Updated 7 months ago
- A Framework for Modelling and Optimizing Advanced Chromatographic Processes☆32Mar 30, 2026Updated last week
- Python utilities for SBML☆41Mar 28, 2026Updated last week
- Library for chemical kinetics in homogeneous or isotropically symmetric inhomogenous systems.☆15May 6, 2023Updated 2 years ago
- Official development repository for SUNDIALS - a SUite of Nonlinear and DIfferential/ALgebraic equation Solvers. Pull requests are welcom…☆643Apr 4, 2026Updated last week
- ☆13Dec 20, 2024Updated last year
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Apr 6, 2024Updated 2 years ago
- Julia interface to the Systems Biology Markup Language (SBML) library☆30Apr 1, 2026Updated last week
- This is the fully public version of QSP Toolbox. Please check the README file for the current version of MATLAB that is supported.☆25Dec 29, 2025Updated 3 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated this week
- A python toolbox for 13C metabolic flux analysis☆23Jul 7, 2025Updated 9 months ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆125Mar 13, 2026Updated 3 weeks ago
- TeX tables for pharmacometrics.☆11Mar 5, 2026Updated last month
- Ontology of algorithms for analyzing biological models, their parameters, and their outputs☆11Mar 31, 2026Updated last week
- Spatial bio-chemical reaction model editor and simulator☆19Updated this week
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15May 30, 2023Updated 2 years ago