Alternatives and similar repositories for AMICI

Users that are interested in AMICI are comparing it to the libraries listed below

• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated 2 weeks ago
• ICB-DCM / pyPESTO
  python Parameter EStimation TOolbox
  ☆265Updated this week
• bjodah / pycvodes
  Python wrapper around cvodes (from the sundials library)
  ☆35Updated 3 months ago
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆28Updated 3 weeks ago
• fides-dev / fides
  Trust Region Optimization in Python
  ☆28Updated last month
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆81Updated 11 months ago
• PEtab-dev / petab_select
  Model selection for PEtab
  ☆13Updated last week
• bmcage / odes
  The ODES scikit for ordinary differential and algebraic equations, an extension to scipy
  ☆131Updated 11 months ago
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 2 weeks ago
• Nicholaswogan / numbalsoda
  Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.
  ☆103Updated 2 years ago
• bjodah / pyodesys
  ∫ Straightforward numerical integration of systems of ordinary differential equations
  ☆96Updated 4 months ago
• Chaste / chaste-docker
  Docker images for Chaste
  ☆12Updated last week
• relf / pyDOE3
  Design of experiments for Python
  ☆51Updated last week
• pymc-devs / sunode
  Solve ODEs fast, with support for PyMC
  ☆117Updated last year
• bjodah / pyneqsys
  Solve symbolically defined systems of non-linear equations numerically.
  ☆52Updated 4 months ago
• ICB-DCM / pyABC
  distributed, likelihood-free inference
  ☆216Updated last month
• andrenarchy / krypy
  Krylov subspace methods package for Python
  ☆107Updated last year
• auto-07p / auto-07p
  AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in …
  ☆140Updated 6 months ago
• saullocastro / cubature
  Python wrapper for the Cubature algorithm explained in: http://ab-initio.mit.edu/wiki/index.php/Cubature
  ☆41Updated 3 months ago
• JuliaRheology / RHEOS.jl
  RHEOS - Open Source Rheology data analysis software
  ☆53Updated 7 months ago
• neurophysik / jitcode
  Just-in-Time Compilation for Ordinary Differential Equations
  ☆68Updated 5 months ago
• robclewley / pydstool
  PyDSTool main development repo
  ☆176Updated 2 years ago
• pdfo / pdfo
  Powell's Derivative-Free Optimization solvers.
  ☆108Updated 7 months ago
• sigma-py / pacopy
  Numerical parameter continuation in Python.
  ☆40Updated last year
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆42Updated 6 months ago
• symengine / symengine.py
  Python wrappers for SymEngine
  ☆186Updated 2 months ago
• equadratures / equadratures
  ☆100Updated 2 months ago
• FerencHegedus / Massively-Parallel-GPU-ODE-Solver
  GPU accelerated integrator for large number of independent ordinary differential equation systems
  ☆38Updated 4 years ago
• chebpy / chebpy
  A Python implementation of Chebfun
  ☆147Updated last week
• scikit-umfpack / scikit-umfpack
  The umfpack scikit provides wrapper of UMFPACK sparse direct solver to SciPy.
  ☆58Updated 3 months ago