Alternatives and similar repositories for AMICI

Users that are interested in AMICI are comparing it to the libraries listed below

• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆61Updated this week
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆29Updated 2 weeks ago
• ICB-DCM / pyPESTO
  python Parameter EStimation TOolbox
  ☆248Updated 2 weeks ago
• fides-dev / fides
  Trust Region Optimization in Python
  ☆27Updated 2 years ago
• PEtab-dev / petab_select
  Model selection for PEtab
  ☆12Updated 3 months ago
• bjodah / pycvodes
  Python wrapper around cvodes (from the sundials library)
  ☆34Updated 2 months ago
• PEtab-dev / libpetab-python
  Python package for working with PEtab files
  ☆14Updated 3 weeks ago
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 3 months ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆74Updated 4 months ago
• neurophysik / jitcode
  Just-in-Time Compilation for Ordinary Differential Equations
  ☆66Updated 3 months ago
• ICB-DCM / pyABC
  distributed, likelihood-free inference
  ☆216Updated this week
• Nicholaswogan / numbalsoda
  Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.
  ☆98Updated 2 years ago
• bjodah / pyodesys
  ∫ Straightforward numerical integration of systems of ordinary differential equations
  ☆94Updated 2 months ago
• Data2Dynamics / d2d
  a modeling environment tailored to parameter estimation in dynamical systems
  ☆59Updated 2 weeks ago
• ICB-DCM / PESTO
  PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
  ☆26Updated 5 years ago
• sigma-py / pacopy
  Numerical parameter continuation in Python.
  ☆39Updated last year
• bmcage / odes
  The ODES scikit for ordinary differential and algebraic equations, an extension to scipy
  ☆124Updated 4 months ago
• pymc-devs / sunode
  Solve ODEs fast, with support for PyMC
  ☆112Updated last year
• auto-07p / auto-07p
  AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in …
  ☆132Updated last year
• yaml2sbml-dev / yaml2sbml
  Tool to convert an ODE model specified in the YAML format to SBML.
  ☆12Updated last year
• sebapersson / PEtab.jl
  Create parameter estimation problems for ODE models
  ☆61Updated last week
• FerencHegedus / Massively-Parallel-GPU-ODE-Solver
  GPU accelerated integrator for large number of independent ordinary differential equation systems
  ☆36Updated 4 years ago
• flatironinstitute / sciware
  Learning materials for scientific software development
  ☆84Updated this week
• markmbaum / libode
  Easy-to-compile, high-order ODE solvers as C++ classes
  ☆43Updated last year
• robclewley / pydstool
  PyDSTool main development repo
  ☆172Updated last year
• cobyqa / cobyqa
  A derivative-free solver for general nonlinear optimization.
  ☆50Updated 2 months ago
• afvillaverde / strike-goldd
  A MATLAB toolbox for analysing structural properties of nonlinear models (identifiability, observability, accessibility, controllability)
  ☆27Updated 3 weeks ago
• florisvb / PyNumDiff
  Methods for numerical differentiation of noisy data in python
  ☆115Updated this week
• SciML / PolyChaos.jl
  A Julia package to construct orthogonal polynomials, their quadrature rules, and use it with polynomial chaos expansions.
  ☆122Updated 7 months ago
• bjodah / pyneqsys
  Solve symbolically defined systems of non-linear equations numerically.
  ☆51Updated 4 months ago