High-performance sensitivity analysis for large ordinary differential equation models
☆144Aug 8, 2026Updated this week
Alternatives and similar repositories for AMICI
Users that are interested in AMICI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆64Jun 22, 2026Updated last month
- Python package for working with PEtab files☆17Updated this week
- python Parameter EStimation TOolbox☆280Updated this week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆35Jul 21, 2026Updated 2 weeks ago
- Model selection for PEtab☆14Jul 21, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Tool to convert an ODE model specified in the YAML format to SBML.☆13Jun 13, 2023Updated 3 years ago
- Trust Region Optimization in Python☆28Nov 11, 2025Updated 8 months ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Jul 14, 2026Updated 3 weeks ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Mar 2, 2020Updated 6 years ago
- distributed, likelihood-free inference☆221Jul 31, 2026Updated last week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 8 months ago
- Create and fit parameter-estimation problems for ODE and SciML models in Julia, leveraging the Julia SciML ecosystem.☆70Jul 28, 2026Updated last week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆24Mar 9, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a modeling environment tailored to parameter estimation in dynamical systems☆65Feb 18, 2026Updated 5 months ago
- Python framework for Systems Biology modeling☆199May 19, 2026Updated 2 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- Python wrapper around KINSOL (from the sundials library)☆10May 20, 2026Updated 2 months ago
- ☆21Updated this week
- Rule-based modeling framework☆70Updated this week
- ☆16Dec 20, 2024Updated last year
- The ODES scikit for ordinary differential and algebraic equations, an extension to scipy☆131Jan 12, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 3 years ago
- The official PySCeS project source code repository.☆41Mar 20, 2026Updated 4 months ago
- Python wrapper around cvodes (from the sundials library)☆35Jul 1, 2026Updated last month
- Solve ODEs fast, with support for PyMC☆121May 13, 2024Updated 2 years ago
- Python utilities for SBML☆41Updated this week
- A Framework for Modelling and Optimizing Advanced Chromatographic Processes☆35Updated this week
- Library for chemical kinetics in homogeneous or isotropically symmetric inhomogenous systems.☆15May 6, 2023Updated 3 years ago
- Official development repository for SUNDIALS - a SUite of Nonlinear and DIfferential/ALgebraic equation Solvers. Pull requests are welcom…☆680Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆16Oct 18, 2024Updated last year
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Apr 6, 2024Updated 2 years ago
- ☆15May 8, 2026Updated 3 months ago
- This is the fully public version of QSP Toolbox. Please check the README file for the current version of MATLAB that is supported.☆26Dec 29, 2025Updated 7 months ago
- A python toolbox for 13C metabolic flux analysis☆24Jul 7, 2025Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆129Updated this week
- TeX tables for pharmacometrics.☆11Updated this week