AMICI-dev / AMICI
Advanced Multilanguage Interface to CVODES and IDAS
☆114Updated last week
Alternatives and similar repositories for AMICI:
Users that are interested in AMICI are comparing it to the libraries listed below
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated this week
- Trust Region Optimization in Python☆27Updated last year
- python Parameter EStimation TOolbox☆233Updated this week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated last month
- Python package for working with PEtab files☆14Updated 2 months ago
- Python wrapper around cvodes (from the sundials library)☆34Updated last month
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Updated last week
- Create parameter estimation problems for ODE models☆55Updated 3 weeks ago
- Modeling toolkit for biochemical simulation☆74Updated last month
- distributed, likelihood-free inference☆208Updated 4 months ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated last year
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- A Julia package to construct orthogonal polynomials, their quadrature rules, and use it with polynomial chaos expansions.☆119Updated 4 months ago
- The ODES scikit for ordinary differential and algebraic equations, an extension to scipy☆124Updated last month
- Python wrapper of LSODA (solving ODEs) which can be called from within numba functions.☆93Updated last year
- Just-in-Time Compilation for Ordinary Differential Equations☆63Updated 2 weeks ago
- Leveraging numba to speed up ODE integration☆70Updated 8 months ago
- GPU accelerated integrator for large number of independent ordinary differential equation systems☆36Updated 4 years ago
- Learning materials for scientific software development☆83Updated last week
- ∫ Straightforward numerical integration of systems of ordinary differential equations☆94Updated 3 weeks ago
- A Python toolkit for coordinating asynchronous and dynamic ensembles of calculations.☆67Updated this week
- Python utilities for SBML☆40Updated last month
- Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichiometry matrices☆26Updated this week
- The third major version of the MUltiScale Coupling Library and Environment☆25Updated this week
- RHEOS - Open Source Rheology data analysis software☆44Updated 5 months ago
- Solve symbolically defined systems of non-linear equations numerically.☆50Updated last month
- Methods for numerical differentiation of noisy data in python☆115Updated 2 weeks ago
- a modeling environment tailored to parameter estimation in dynamical systems☆58Updated this week
- Numerical parameter continuation in Python.☆39Updated 11 months ago