High-performance sensitivity analysis for large ordinary differential equation models
☆136Apr 14, 2026Updated 2 weeks ago
Alternatives and similar repositories for AMICI
Users that are interested in AMICI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆63Mar 27, 2026Updated last month
- python Parameter EStimation TOolbox☆270Apr 24, 2026Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆32Apr 14, 2026Updated 2 weeks ago
- Model selection for PEtab☆14Mar 30, 2026Updated last month
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Jun 13, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Trust Region Optimization in Python☆28Nov 11, 2025Updated 5 months ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Dec 15, 2025Updated 4 months ago
- Python package for building SBML models without needing to use libSBML.☆11Aug 18, 2021Updated 4 years ago
- distributed, likelihood-free inference☆220Apr 14, 2026Updated 2 weeks ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- Create parameter estimation problems for ODE models☆70Apr 24, 2026Updated last week
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated last month
- a modeling environment tailored to parameter estimation in dynamical systems☆65Feb 18, 2026Updated 2 months ago
- Python framework for Systems Biology modeling☆196Mar 30, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- libRoadRunner: A high-performance SBML simulator☆59Mar 26, 2026Updated last month
- R Interface to CVODE/CVODES/IDA functions in the SUNDIALS ODE solving C library☆11Apr 19, 2026Updated last week
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- LibSBMLSim: A library for simulating SBML models☆13Sep 14, 2021Updated 4 years ago
- Python wrapper around KINSOL (from the sundials library)☆10Nov 24, 2025Updated 5 months ago
- The ODES scikit for ordinary differential and algebraic equations, an extension to scipy☆131Jan 12, 2025Updated last year
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- ☆20Apr 4, 2026Updated 3 weeks ago
- The official PySCeS project source code repository.☆40Mar 20, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python Environment for Modeling and Simulating Biological Systems☆137Apr 10, 2026Updated 3 weeks ago
- Assimulo is a simulation package for solving ordinary differential equations.☆89Jan 27, 2026Updated 3 months ago
- Methods for profile likelihood analysis.☆19Nov 4, 2024Updated last year
- A Framework for Modelling and Optimizing Advanced Chromatographic Processes☆33Apr 24, 2026Updated last week
- Solve ODEs fast, with support for PyMC☆120May 13, 2024Updated last year
- Python utilities for SBML☆41Apr 23, 2026Updated last week
- Library for chemical kinetics in homogeneous or isotropically symmetric inhomogenous systems.☆15May 6, 2023Updated 2 years ago
- Official development repository for SUNDIALS - a SUite of Nonlinear and DIfferential/ALgebraic equation Solvers. Pull requests are welcom…☆648Apr 23, 2026Updated last week
- ☆14Dec 20, 2024Updated last year
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Apr 6, 2024Updated 2 years ago
- Julia interface to the Systems Biology Markup Language (SBML) library☆31Apr 1, 2026Updated 3 weeks ago
- This is the fully public version of QSP Toolbox. Please check the README file for the current version of MATLAB that is supported.☆25Dec 29, 2025Updated 4 months ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Apr 6, 2026Updated 3 weeks ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆125Mar 13, 2026Updated last month
- EPI is a python package for inverse parameter inference☆13Apr 6, 2026Updated 3 weeks ago
- TeX tables for pharmacometrics.☆11Apr 15, 2026Updated 2 weeks ago