Alternatives and similar repositories for PEtab

Users that are interested in PEtab are comparing it to the libraries listed below

• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆28Updated last month
• AMICI-dev / AMICI
  High-performance sensitivity analysis for large ordinary differential equation models
  ☆125Updated last week
• PEtab-dev / libpetab-python
  Python package for working with PEtab files
  ☆15Updated this week
• PEtab-dev / petab_select
  Model selection for PEtab
  ☆13Updated last month
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆79Updated 8 months ago
• ICB-DCM / pyPESTO
  python Parameter EStimation TOolbox
  ☆261Updated last week
• ICB-DCM / pyABC
  distributed, likelihood-free inference
  ☆217Updated 3 months ago
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 7 months ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last month
• fides-dev / fides
  Trust Region Optimization in Python
  ☆28Updated 2 years ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• Data2Dynamics / d2d
  a modeling environment tailored to parameter estimation in dynamical systems
  ☆61Updated 2 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• ICB-DCM / PESTO
  PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
  ☆26Updated 5 years ago
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆115Updated 2 weeks ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆52Updated this week
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 5 years ago
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆42Updated 3 months ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆123Updated 2 months ago
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆26Updated 2 months ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆24Updated 2 months ago
• juliendelile / MECAGEN
  Simulation platform of animal embryogenesis
  ☆20Updated 3 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆65Updated 4 months ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last month
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆186Updated 2 months ago
• gchure / reproducible_research
  A template repository for how I structure my scientific research
  ☆98Updated last year
• opencobra / COBRA.jl
  High-level, high-performance, constraint-based reconstruction and analysis in Julia
  ☆62Updated 2 years ago
• CompuCell3D / CompuCell3D
  CompuCell3D public source code repository
  ☆74Updated 2 weeks ago
• yaml2sbml-dev / yaml2sbml
  Tool to convert an ODE model specified in the YAML format to SBML.
  ☆12Updated 2 years ago