Alternatives and similar repositories for PEtab

Users that are interested in PEtab are comparing it to the libraries listed below

• AMICI-dev / AMICI
  High-performance sensitivity analysis for large ordinary differential equation models
  ☆125Updated last week
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆76Updated 7 months ago
• PEtab-dev / libpetab-python
  Python package for working with PEtab files
  ☆14Updated last week
• ICB-DCM / pyPESTO
  python Parameter EStimation TOolbox
  ☆254Updated this week
• ICB-DCM / pyABC
  distributed, likelihood-free inference
  ☆216Updated 2 months ago
• PEtab-dev / petab_select
  Model selection for PEtab
  ☆12Updated 2 weeks ago
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 6 months ago
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated 2 months ago
• fides-dev / fides
  Trust Region Optimization in Python
  ☆28Updated 2 years ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆22Updated 3 weeks ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated last year
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• Data2Dynamics / d2d
  a modeling environment tailored to parameter estimation in dynamical systems
  ☆61Updated last month
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆42Updated 2 months ago
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆26Updated 3 weeks ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 4 years ago
• ICB-DCM / PESTO
  PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.
  ☆26Updated 5 years ago
• brentp / slurmpy
  submit jobs to slurm with quick-and-dirty python
  ☆94Updated 2 years ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆50Updated last month
• neurophysik / jitcode
  Just-in-Time Compilation for Ordinary Differential Equations
  ☆67Updated last month
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated last week
• juliendelile / MECAGEN
  Simulation platform of animal embryogenesis
  ☆20Updated 3 years ago
• cellmodeller / CellModeller
  GPU-accelerated multicellular modelling framework
  ☆64Updated 4 months ago
• pymc-devs / sunode
  Solve ODEs fast, with support for PyMC
  ☆114Updated last year
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆184Updated last month
• JuBiotech / calibr8
  Toolbox for non-linear calibration modeling.
  ☆26Updated 2 weeks ago
• gchure / reproducible_research
  A template repository for how I structure my scientific research
  ☆99Updated last year
• ElisabethRoesch / Perspective_Julia_for_Biologists
  Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I
  ☆100Updated 2 years ago
• CASCI-lab / CANA
  CANAlization: Control & Redundancy in Boolean Networks
  ☆25Updated last year