ICB-DCM / parPELinks
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
☆22Updated last month
Alternatives and similar repositories for parPE
Users that are interested in parPE are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆61Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆30Updated 2 weeks ago
- High-performance sensitivity analysis for large ordinary differential equation models☆130Updated last week
- python Parameter EStimation TOolbox☆266Updated this week
- a modeling environment tailored to parameter estimation in dynamical systems☆65Updated 6 months ago
- Model selection for PEtab☆13Updated last month
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Updated 5 years ago
- Python package for working with PEtab files☆16Updated this week
- Python utilities for SBML☆41Updated 2 weeks ago
- Trust Region Optimization in Python☆28Updated 2 months ago
- Modeling toolkit for biochemical simulation☆82Updated last year
- SIAN (Structural Identifiability ANalyser) is a software for assessing structural identifiability of ODE models.☆22Updated 2 years ago
- a collection of modern sparse (regularized) linear regression algorithms.☆65Updated 5 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- distributed, likelihood-free inference☆216Updated last month
- Docker images for Chaste☆13Updated last week
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Updated last year
- Fast computation of diffusion maps and geometric harmonics in Python. Moved to https://git.sr.ht/~jmbr/diffusion-maps☆42Updated 4 years ago
- ☆10Updated 6 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated 2 years ago
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆26Updated 10 months ago
- Biologically-informed neural networks☆39Updated 5 years ago
- Symbolic Kinetic Models with Python☆34Updated 8 months ago
- A Python package for General Graphical Lasso computation☆40Updated 11 months ago
- Solve ODEs fast, with support for PyMC☆119Updated last year
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆43Updated 7 months ago
- The official PySCeS project source code repository.☆39Updated last month
- Rule-based modeling framework☆66Updated 8 months ago
- Python wrapper around cvodes (from the sundials library)☆35Updated 5 months ago