Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
☆21Dec 15, 2025Updated 4 months ago
Alternatives and similar repositories for parPE
Users that are interested in parPE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python package for working with PEtab files☆16Mar 31, 2026Updated last month
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Jun 13, 2023Updated 2 years ago
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆32Apr 14, 2026Updated 2 weeks ago
- Model selection for PEtab☆14Mar 30, 2026Updated last month
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆63Mar 27, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆27Mar 2, 2020Updated 6 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated last year
- distributed, likelihood-free inference☆220Apr 14, 2026Updated 2 weeks ago
- The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in part…☆12May 16, 2023Updated 2 years ago
- Python utilities for SBML☆41Apr 23, 2026Updated last week
- Dynamic modeling and parameter estimation in R☆22Mar 9, 2025Updated last year
- TSG Client is a Python library for interacting with the TNO Security Gateway (TSG) Core Container☆18Mar 28, 2025Updated last year
- Convert latex to svg☆12Oct 26, 2022Updated 3 years ago
- Trust Region Optimization in Python☆28Nov 11, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Dec 3, 2025Updated 5 months ago
- a modeling environment tailored to parameter estimation in dynamical systems☆65Feb 18, 2026Updated 2 months ago
- PyCTD is a Python software package to query and analyse data from the CTD database☆12Oct 6, 2022Updated 3 years ago
- A Python Framework for Modeling and Analysis of Signaling Systems☆29Mar 16, 2026Updated last month
- Encoding Dynamic Flux Balance Analysis in SBML☆12Sep 16, 2020Updated 5 years ago
- ☆20Apr 4, 2026Updated 3 weeks ago
- This repository provides an implementation of DeCaFlow, designed for ease of integration and usability. The codebase is clean, concise, a…☆28Apr 6, 2026Updated 3 weeks ago
- Free and open implementation of the IEC 60870-6 TASE.2 protocol☆20Apr 29, 2020Updated 6 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Apr 6, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology☆32Dec 16, 2019Updated 6 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated last year
- This repository provides a Matlab interface to Woltring's classic generalized, cross-validatory (GCV) spline smoothing and differentiatio…☆10Jan 25, 2023Updated 3 years ago
- This repo contains the code for the paper "Data-driven discovery of multiscale chemical reactions governed by the law of mass action"☆10Mar 2, 2022Updated 4 years ago
- AlphaHydrogen is an open source OpenAI Gym environment that simulates the energy system of a residential community with distributed renew…☆17Oct 5, 2021Updated 4 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Jan 7, 2022Updated 4 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- Write great documents with markdown, then execute in the shell.☆10Sep 1, 2017Updated 8 years ago
- ☆13Jun 3, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Rule-based modeling framework☆67Apr 24, 2026Updated last week
- Simulation platform for drones swarms☆18Feb 22, 2024Updated 2 years ago
- CIM for the Norwegian Power Utility☆31Nov 13, 2025Updated 5 months ago
- Open-TYNDP: Interfacing Open Energy System Planning with ENTSO-E Models and Contributing to TYNDP☆47Updated this week
- Workshop assignments on power-grid-model: A distribution power system analysis library☆29Updated this week
- ☆17Mar 22, 2026Updated last month
- Dynamic models for single-cell RNA-seq time series.☆40Sep 24, 2018Updated 7 years ago