ICB-DCM / parPELinks
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
☆22Updated 5 months ago
Alternatives and similar repositories for parPE
Users that are interested in parPE are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆29Updated 2 weeks ago
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- High-performance sensitivity analysis for large ordinary differential equation models☆124Updated last week
- Trust Region Optimization in Python☆27Updated 2 years ago
- python Parameter EStimation TOolbox☆250Updated last week
- a modeling environment tailored to parameter estimation in dynamical systems☆59Updated 2 weeks ago
- Python utilities for SBML☆41Updated 2 months ago
- Python package for working with PEtab files☆14Updated last week
- Model selection for PEtab☆12Updated 5 months ago
- Modeling toolkit for biochemical simulation☆75Updated 6 months ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆41Updated last month
- a collection of modern sparse (regularized) linear regression algorithms.☆64Updated 5 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 11 months ago
- The official PySCeS project source code repository.☆38Updated last week
- distributed, likelihood-free inference☆216Updated last month
- Python implementation of Langevin inference methods from time series.☆29Updated 3 weeks ago
- Tool to convert an ODE model specified in the YAML format to SBML.☆12Updated 2 years ago
- libRoadRunner: A high-performance SBML simulator☆51Updated 3 weeks ago
- A MATLAB toolbox for analysing structural properties of nonlinear models (identifiability, observability, accessibility, controllability)☆29Updated 2 months ago
- Rule-based modeling framework☆64Updated 2 months ago
- Python Environment for Modeling and Simulating Biological Systems☆122Updated 3 weeks ago
- A Python package for General Graphical Lasso computation☆36Updated 5 months ago
- Design of experiments for Python☆38Updated 3 weeks ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Python wrapper around cvodes (from the sundials library)☆35Updated 2 weeks ago
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Updated last year
- Methods for numerical differentiation of noisy data in python☆120Updated this week
- Biologically-informed neural networks☆28Updated 4 years ago