ICB-DCM / parPELinks
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
☆22Updated 7 months ago
Alternatives and similar repositories for parPE
Users that are interested in parPE are comparing it to the libraries listed below
Sorting:
- PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology☆60Updated this week
- python Parameter EStimation TOolbox☆261Updated last week
- PESTO: Parameter EStimation TOolbox, Bioinformatics, btx676, 2017.☆26Updated 5 years ago
- High-performance sensitivity analysis for large ordinary differential equation models☆125Updated last week
- A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…☆28Updated last month
- Model selection for PEtab☆13Updated last month
- a modeling environment tailored to parameter estimation in dynamical systems☆61Updated 2 months ago
- Trust Region Optimization in Python☆28Updated 2 years ago
- Biologically-informed neural networks☆30Updated 4 years ago
- Python package for working with PEtab files☆15Updated this week
- a collection of modern sparse (regularized) linear regression algorithms.☆65Updated 5 years ago
- Modeling toolkit for biochemical simulation☆79Updated 8 months ago
- Python utilities for SBML☆41Updated last month
- distributed, likelihood-free inference☆217Updated 3 months ago
- SIAN (Structural Identifiability ANalyser) is a software for assessing structural identifiability of ODE models.☆22Updated 2 years ago
- A Python package for General Graphical Lasso computation☆37Updated 7 months ago
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆42Updated 3 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Python implementation of Langevin inference methods from time series.☆31Updated 2 weeks ago
- Stiff Neural Ordinary Differential Equations☆35Updated 2 years ago
- Solve ODEs fast, with support for PyMC☆117Updated last year
- ☆36Updated 3 years ago
- Design of experiments for Python☆42Updated last week
- Python wrapper around cvodes (from the sundials library)☆35Updated last month
- Algorithm for Revealing Network Interactions (ARNI) from nonlinear collective dynamics☆28Updated 7 years ago
- ☆10Updated 6 years ago
- A MATLAB toolbox for analysing structural properties of nonlinear models (identifiability, observability, accessibility, controllability)☆31Updated last week
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆22Updated 6 months ago
- libRoadRunner: A high-performance SBML simulator☆52Updated this week
- Optimal numerical differentiation of noisy time series data in python.☆65Updated 3 months ago