A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
☆19May 24, 2024Updated 2 years ago
Alternatives and similar repositories for nfsim
Users that are interested in nfsim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rule-based modeling framework☆70Sep 14, 2026Updated last week
- Rule-Based Modeling and Simulation Gui☆12Jun 12, 2020Updated 6 years ago
- MCell Monte Carlo Simulator of Cellular Microphysiology☆39Jul 9, 2026Updated 2 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- A tool for the perception of chemical bonds via machine learning☆10Nov 15, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- 3D computational model for lipid membranes☆29Feb 17, 2025Updated last year
- ☆10Dec 15, 2016Updated 9 years ago
- This is an older version of cytosim, a cytoskeleton simulation engine☆29Nov 2, 2021Updated 4 years ago
- persist the elscreen across sessions☆11May 6, 2016Updated 10 years ago
- GMTKN test sets in python☆11Dec 17, 2021Updated 4 years ago
- Rust wrapper for the RDKit using CFFI☆16Jul 17, 2026Updated 2 months ago
- C++ code for implementations of the temporal Gillespie algorithm.☆12Feb 16, 2019Updated 7 years ago
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 6 years ago
- Zeobuilder is an extensible GUI-toolkit for molecular model construction.☆13Feb 15, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- An implementation of genome-scale model reconstruction using Cost Optimization Reaction Dependency Assessment by Schultz et. al☆26Jul 15, 2024Updated 2 years ago
- Python repository with various projects in Machine Learning and Finance☆14Updated this week
- Pandas-aware non-linear least squares regression using Lmfit☆10Aug 15, 2016Updated 10 years ago
- A lightweight C++11 Monte Carlo molecular simulation engine☆10Aug 1, 2017Updated 9 years ago
- A library for converting molecular topologies☆13May 20, 2015Updated 11 years ago
- A python package for simulation and analysis of dynamic Boolean network models☆11Jan 23, 2019Updated 7 years ago
- Python library & CLI to create, view and edit PFB files☆14Aug 31, 2026Updated 3 weeks ago
- Bayesian inference of conformational populations☆14Jun 11, 2025Updated last year
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- whirlpool cryptographic hashing library☆29Oct 16, 2020Updated 5 years ago
- A VMD script to calculate side-chain and backbone dihedrals (torsion angles)☆14Jun 4, 2016Updated 10 years ago
- Unbiased MCMC with couplings☆20Sep 19, 2019Updated 7 years ago
- A software for Simulated Moving Bed (SMB) chromatographic processes☆13Mar 24, 2023Updated 3 years ago
- Open-source implementation of PC-SAFT equation of state☆13Oct 20, 2022Updated 3 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- ☆11Dec 15, 2023Updated 2 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆13Sep 16, 2020Updated 6 years ago
- An extension for NetLogo that gives access to Matlab functions from a Netlogo script and allows data-passsing between the two programs.☆11May 12, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code generation of Kotlin DSL for AWS CDK☆13Aug 16, 2021Updated 5 years ago
- Library for chemical kinetics in homogeneous or isotropically symmetric inhomogenous systems.☆15May 6, 2023Updated 3 years ago
- A simulator for single molecule FRET experiments of freely diffusing particles. Moved to:☆19Jun 13, 2019Updated 7 years ago
- ☆23Updated this week
- Leaguerunner is a web-based application for managing scheduling, score submission and standings for an Ultimate Frisbee league.☆15Feb 6, 2013Updated 13 years ago
- PyEMMA Jupyter Notebooks☆13Jan 28, 2021Updated 5 years ago
- Core Interface and Engine for Vivarium 1.0☆38Aug 8, 2026Updated last month