A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
☆19May 24, 2024Updated 2 years ago
Alternatives and similar repositories for nfsim
Users that are interested in nfsim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆15May 12, 2026Updated last week
- ☆18Feb 11, 2026Updated 3 months ago
- Rule-Based Modeling and Simulation Gui☆12Jun 12, 2020Updated 5 years ago
- MCell Monte Carlo Simulator of Cellular Microphysiology☆38Mar 24, 2026Updated 2 months ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is an older version of cytosim, a cytoskeleton simulation engine☆29Nov 2, 2021Updated 4 years ago
- 3D computational model for lipid membranes☆28Feb 17, 2025Updated last year
- Martini Workshop: Simulating a Minimal Bacterial Cell☆15May 13, 2024Updated 2 years ago
- Random Circuit Perturbation Method☆16Jun 29, 2020Updated 5 years ago
- Zeobuilder is an extensible GUI-toolkit for molecular model construction.☆13Feb 15, 2019Updated 7 years ago
- Build and test new apps for the KBase platform☆28Feb 25, 2025Updated last year
- Python repository with various projects in Machine Learning and Finance☆14May 17, 2026Updated last week
- A lightweight C++11 Monte Carlo molecular simulation engine☆10Aug 1, 2017Updated 8 years ago
- A library for converting molecular topologies☆13May 20, 2015Updated 11 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian inference of conformational populations☆14Jun 11, 2025Updated 11 months ago
- Python library & CLI to create, view and edit PFB files☆14Apr 24, 2026Updated last month
- Python library for fitting massive mixture models using DP priors and GPU computation.☆23Apr 7, 2016Updated 10 years ago
- A VMD script to calculate side-chain and backbone dihedrals (torsion angles)☆14Jun 4, 2016Updated 9 years ago
- Release of the whole cell E. coli model.☆77Dec 10, 2024Updated last year
- C++ implementation of the Diffusion Map, with Python bindings☆10Aug 22, 2017Updated 8 years ago
- Unbiased MCMC with couplings☆19Sep 19, 2019Updated 6 years ago
- ☆10Jan 19, 2019Updated 7 years ago
- Open-source implementation of PC-SAFT equation of state☆12Oct 20, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository…☆14Feb 13, 2023Updated 3 years ago
- Pandas-aware non-linear least squares regression using Lmfit☆10Aug 15, 2016Updated 9 years ago
- A Python framework for structural bioinformatics.☆14Jan 20, 2024Updated 2 years ago
- A python package for simulation and analysis of dynamic Boolean network models☆11Jan 23, 2019Updated 7 years ago
- A potential solution to the early-stage small molecule hit identification☆16Jan 27, 2026Updated 3 months ago
- ☆10Dec 15, 2023Updated 2 years ago
- Code generation of Kotlin DSL for AWS CDK☆13Aug 16, 2021Updated 4 years ago
- Library for chemical kinetics in homogeneous or isotropically symmetric inhomogenous systems.☆15May 6, 2023Updated 3 years ago
- An extension for NetLogo that gives access to Matlab functions from a Netlogo script and allows data-passsing between the two programs.☆11May 12, 2021Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Implementation of the Pairformer model used in AlphaFold 3☆14May 11, 2026Updated last week
- Leaguerunner is a web-based application for managing scheduling, score submission and standings for an Ultimate Frisbee league.☆15Feb 6, 2013Updated 13 years ago
- Screeps server in a Docker container (using MongoDB & Redis)☆13Dec 9, 2020Updated 5 years ago
- Core Interface and Engine for Vivarium 1.0☆36Dec 3, 2024Updated last year
- This software allows users to perform statistical test to determine if a given molecular simulation is consistent with the thermodynamic …☆14Apr 12, 2018Updated 8 years ago
- ☆11Sep 15, 2015Updated 10 years ago
- A CLI for updating Strava activities in bulk, uploading manual activities in bulk, and more.☆15Jan 1, 2020Updated 6 years ago