Alternatives and similar repositories for bioscrape:

Users that are interested in bioscrape are comparing it to the libraries listed below

• BuildACell / bioCRNpyler
  A modular compiler for biological chemical reaction networks
  ☆43Updated 2 weeks ago
• quantumbrake / cayenne
  Python package for stochastic simulations
  ☆17Updated this week
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 4 years ago
• usnistgov / lantern
  Interpretable genotype-phenotype landscape modeling
  ☆35Updated last year
• Luthey-Schulten-Lab / Lattice_Microbes
  ☆31Updated 3 years ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆22Updated 4 months ago
• ciemss / pyciemss
  Causal and probabilistic reasoning with continuous time dynamical systems
  ☆17Updated last week
• SynBioDex / pySBOL3
  Native python implementation of SBOL 3.0 specification
  ☆39Updated this week
• msmdev / pyGPCCA
  pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…
  ☆21Updated 3 months ago
• SBRG / MASSpy
  ☆22Updated 2 years ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆23Updated this week
• reactome / reactome2py
  python client for reactome content, analysis, and human functional protein interactions (FI) services api calls.
  ☆28Updated last year
• tlubitz / parameter_balancing
  Software tool for metabolic modelling in Systems Biology
  ☆10Updated 4 years ago
• PeptoneLtd / ADOPT
  ADOPT: intrinsic protein disorder prediction through deep bidirectional transformers
  ☆17Updated 3 months ago
• justinbois / biocircuits
  Utilities for Caltech course BE 150
  ☆22Updated last year
• jmschrei / ledidi
  Ledidi turns any machine learning model into a biological sequence editor, allowing you to design sequences with desired properties.
  ☆70Updated 2 months ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• debbiemarkslab / variational-synthesis
  Repository for the paper "Optimal design of stochastic DNA synthesis protocols based on generative sequence models" (Weinstein et al., AI…
  ☆32Updated 3 years ago
• UCL / cathpy
  Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)
  ☆14Updated 5 months ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆61Updated 5 months ago
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆31Updated last week
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆104Updated last week
• Edinburgh-Genome-Foundry / DnaCauldron
  Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies
  ☆55Updated last year
• JBEI / KineticLearning
  Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
  ☆28Updated 2 years ago
• lakigigar / bioRxiv-diff
  ☆12Updated 6 months ago
• psipred / DMPfold2
  Fast and accurate protein structure prediction
  ☆49Updated last month
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆45Updated last week
• TurtleTools / geometricus
  A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.
  ☆37Updated last year
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆37Updated this week