Bioscrape: Biological Modeling, Simulation, and Parameter Estimation
☆30Sep 28, 2026Updated 2 weeks ago
Alternatives and similar repositories for bioscrape
Users that are interested in bioscrape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆16Jan 9, 2021Updated 5 years ago
- Software tool for metabolic modelling in Systems Biology☆10Jul 24, 2026Updated 2 months ago
- Julia for Systems Biology Workshop @JuliaCon 2024☆13Jul 8, 2024Updated 2 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Cython library for random number generation☆10Jan 24, 2017Updated 9 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Deprecated: please use GillesPy2☆12Oct 15, 2019Updated 6 years ago
- Dynamic Flux Balance analysis in Python☆12Jan 22, 2016Updated 10 years ago
- A Matlab implementation for automatic segmentation with a graphical user interface☆17Apr 7, 2019Updated 7 years ago
- Native python implementation of SBOL 3.0 specification☆51Sep 30, 2026Updated last week
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆28Jul 14, 2025Updated last year
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆28Mar 13, 2023Updated 3 years ago
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆25Oct 5, 2026Updated last week
- LEMS interpreter implemented in Python☆12Jul 31, 2026Updated 2 months ago
- ☆27Dec 9, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generator and regressor neural networks for antimicrobial peptides☆23Jan 30, 2024Updated 2 years ago
- A template website for presenting your reproducible website☆16Apr 12, 2023Updated 3 years ago
- ☆11Nov 2, 2023Updated 2 years ago
- Code for projecting volumetric nifti files to HCP surface and Glasser atlas parcel-wise value extraction☆12May 21, 2023Updated 3 years ago
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆21Aug 29, 2024Updated 2 years ago
- ☆22Sep 19, 2025Updated last year
- Release of the whole cell E. coli model.☆80Dec 10, 2024Updated last year
- Software for in silico evolution - Paul François' group McGill University☆10Mar 16, 2022Updated 4 years ago
- Tools for programming chemical reaction networks (CRN), DNA strand-displacement circuits (DSD) and genetically engineered circuits (GEC).…☆28Apr 22, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆173Sep 12, 2026Updated last month
- Advance algorithm implementations☆14Aug 24, 2021Updated 5 years ago
- ☆12Jan 23, 2020Updated 6 years ago
- BluePyEfe: Blue Brain Python E-feature extraction☆17Feb 26, 2025Updated last year
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Sep 1, 2026Updated last month
- a repository containing everything relevant to our fast non-negative deconvolution work☆35Nov 28, 2016Updated 9 years ago
- Automatic selection and generation of integration schemes for systems of ordinary differential equations☆15Aug 26, 2026Updated last month
- Whole cell model of E. coli implemented with Vivarium☆34Updated this week
- A simulation of the Tomasulo algorithm, a hardware algorithm for out-of-order scheduling and execution of computer instructions, written …☆17Apr 22, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Feb 26, 2019Updated 7 years ago
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 3 years ago
- Python Environment for Modeling and Simulating Biological Systems☆146Aug 29, 2026Updated last month
- up-to-date code for model-based inference of spike trains from calcium imaging☆24Apr 16, 2018Updated 8 years ago
- NUPACK is a growing software suite for the analysis and design of nucleic acid structures, devices, and systems.☆15Apr 1, 2021Updated 5 years ago
- ☆18Dec 18, 2024Updated last year
- ☆15Jun 11, 2025Updated last year