Alternatives and similar repositories for sbmlutils

Users that are interested in sbmlutils are comparing it to the libraries listed below

• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆12Updated 4 years ago
• sys-bio / tellurium
  Python Environment for Modeling and Simulating Biological Systems
  ☆122Updated 3 weeks ago
• Benchmarking-Initiative / Benchmark-Models-PEtab
  A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existin…
  ☆29Updated 2 weeks ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated 11 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• PEtab-dev / PEtab
  PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology
  ☆60Updated last week
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆51Updated 3 weeks ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆22Updated last week
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆64Updated 2 months ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 3 months ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆38Updated this week
• copasi / COPASI
  COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.
  ☆113Updated this week
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆75Updated 6 months ago
• PEtab-dev / libpetab-python
  Python package for working with PEtab files
  ☆14Updated last week
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• EPFL-LCSB / skimpy
  Symbolic Kinetic Models with Python
  ☆32Updated 2 months ago
• SBRG / bigg_models
  The BiGG Models website server
  ☆83Updated 5 years ago
• draeger-lab / ModelPolisher
  ModelPolisher accesses the BiGG Models knowledgebase to annotate SBML models.
  ☆23Updated 6 months ago
• modsim / FluxML
  A Universal Modeling Language for Metabolic Flux Analysis
  ☆12Updated 5 months ago
• pysb / pysb
  Python framework for Systems Biology modeling
  ☆183Updated 2 weeks ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last week
• fumiomatsuda / mfapy
  A python toolbox for 13C metabolic flux analysis
  ☆23Updated last month
• cnapy-org / CNApy
  An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced feat…
  ☆57Updated 2 weeks ago
• biocircuits / bioscrape
  BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)
  ☆29Updated 4 months ago
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆22Updated 5 months ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated 2 years ago
• biosustain / Maud
  Enzyme models that take into account kinetics, allostery and thermodynamics
  ☆27Updated 11 months ago
• EPFL-LCSB / pytfa
  A Python 3 implementation of Thermodynamics-based Flux Analysis
  ☆39Updated 3 weeks ago
• CovertLab / WholeCellEcoliRelease
  Release of the whole cell E. coli model.
  ☆68Updated 7 months ago