Alternatives and similar repositories for libcellml

Users that are interested in libcellml are comparing it to the libraries listed below

• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated 9 months ago
• avramidis / sodecl
  SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.
  ☆11Updated 4 years ago
• bjodah / pygslodeiv2
  Python binding for odeiv2 interface from GNU Scientific Library (GSL)
  ☆14Updated 4 months ago
• bjodah / pyodeint
  Python wrapper around odeint (from the boost C++ library)
  ☆20Updated 2 months ago
• SED-ML / KiSAO
  Ontology of algorithms for analyzing biological models, their parameters, and their outputs
  ☆10Updated 6 months ago
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆23Updated 3 weeks ago
• sbmlteam / libsbml
  LibSBML is a native library for reading, writing and manipulating files and data streams containing the Systems Biology Markup Language (…
  ☆49Updated last week
• bjodah / sym
  Unified interface to symbolic manipulation libraries in Python
  ☆9Updated 3 months ago
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆74Updated 4 months ago
• sys-bio / antimony
  ☆18Updated last week
• conda-forge / ctng-compiler-activation-feedstock
  A conda-smithy repository for ctng-compiler-activation.
  ☆13Updated this week
• bjodah / pycvodes
  Python wrapper around cvodes (from the sundials library)
  ☆34Updated 2 months ago
• SystemsBioinformatics / stochpy
  StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks
  ☆42Updated last month
• GLVis / pyglvis
  GLVis Jupyter Widget
  ☆17Updated 3 weeks ago
• spatial-model-editor / spatial-model-editor
  Spatial bio-chemical reaction model editor and simulator
  ☆16Updated last week
• matthiaskoenig / sbmlutils
  Python utilities for SBML
  ☆41Updated last month
• xtensor-stack / xtensor-julia
  Julia bindings for xtensor
  ☆19Updated 2 years ago
• CNS-OIST / STEPS
  Public release repository for STochastic Engine for Pathway Simulation (STEPS)
  ☆40Updated 2 weeks ago
• conda-forge / llvmdev-feedstock
  A conda-smithy repository for llvmdev.
  ☆9Updated last week
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• rseng / rseng
  research software engineering taxonomy and criteria
  ☆11Updated 2 years ago
• HDFGroup / hdf5_plugins
  ☆14Updated this week
• finsberg / gotranx
  Next generation ODE translator
  ☆12Updated this week
• NeuralEnsemble / lazyarray
  lazyarray is a Python package that provides a lazily-evaluated numerical array class, larray, based on and compatible with NumPy arrays.
  ☆21Updated 8 months ago
• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆64Updated last week
• Quansight / open-gpu-server
  The Open GPU Server for CI purpose.
  ☆12Updated 2 weeks ago
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆49Updated last month
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 4 years ago
• finch-tensor / finch-tensor-python
  Sparse and Structured Tensor Programming in Python
  ☆15Updated 2 weeks ago
• bjodah / pyneqsys
  Solve symbolically defined systems of non-linear equations numerically.
  ☆51Updated 4 months ago