KarrLab / intro_to_wc_modeling
Whole-cell modeling tutorials
☆16Updated 4 years ago
Alternatives and similar repositories for intro_to_wc_modeling:
Users that are interested in intro_to_wc_modeling are comparing it to the libraries listed below
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 2 weeks ago
- MathIOmica is a Mathematica package for omics data analyses☆12Updated last year
- Rule-based modeling framework☆62Updated 2 weeks ago
- A tool for creating Python implementations of SBML models.☆14Updated 2 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated this week
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 8 months ago
- Namespace encoding hierarchical relationships between proteins, protein families, and protein complexes.☆12Updated 4 years ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated 3 weeks ago
- MCell Monte Carlo Simulator of Cellular Microphysiology☆35Updated this week
- Software for in silico evolution - Paul François' group McGill University☆10Updated 3 years ago
- Build and test new apps for the KBase platform☆28Updated 2 months ago
- Random Circuit Perturbation Method☆15Updated 4 years ago
- ☆31Updated 3 years ago
- 🎺 Plot DNA digestion band patterns with Python☆20Updated last month
- Parsing MHC nomenclature in the wild☆16Updated last month
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- SBOL Designer Project☆32Updated 3 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated 11 months ago
- Python utilities for SBML☆41Updated 2 weeks ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆36Updated 6 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆26Updated last month
- TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA featur…☆15Updated 2 years ago
- A Python toolbox for COPASI☆13Updated 11 months ago
- bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆17Updated 4 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆24Updated this week
- ☆12Updated 10 years ago