KarrLab / intro_to_wc_modeling
Whole-cell modeling tutorials
☆16Updated 4 years ago
Alternatives and similar repositories for intro_to_wc_modeling:
Users that are interested in intro_to_wc_modeling are comparing it to the libraries listed below
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated 5 months ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated last year
- Encoding Dynamic Flux Balance Analysis in SBML☆11Updated 4 years ago
- Rule-based modeling framework☆61Updated 4 months ago
- bioscrape (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆17Updated 4 years ago
- Boolean Network Modeling☆38Updated 5 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 8 months ago
- ☆18Updated last week
- ☆32Updated 3 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆20Updated this week
- libRoadRunner: A high-performance SBML simulator☆44Updated this week
- Build and test new apps for the KBase platform☆28Updated 9 months ago
- GPU-accelerated multicellular modelling framework☆59Updated 10 months ago
- A project to capture biological pathway data from academic papers☆29Updated 2 weeks ago
- Python framework for multi-parameter optimization and evaluation of protein folding models☆16Updated 3 years ago
- A tool for creating Python implementations of SBML models.☆13Updated 2 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated 8 months ago
- ☆31Updated 3 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆17Updated this week
- MCell Monte Carlo Simulator of Cellular Microphysiology☆35Updated 11 months ago
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆22Updated 3 months ago
- 🎨 Python library to plot multi-part genetic constructs☆25Updated last year
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆23Updated last year
- cy3sbml: SBML for Cytoscape 3☆13Updated 2 years ago
- ☆12Updated 10 years ago
- Simulation platform of animal embryogenesis☆20Updated 2 years ago
- Python Bioinformatics Toolkit for CATH (Protein Classification Database @ UCL)☆14Updated 4 months ago
- A knowledge resource on cell lines - From SIB CALIPHO group☆13Updated last year