KarrLab / intro_to_wc_modelingLinks
Whole-cell modeling tutorials
☆16Updated 5 years ago
Alternatives and similar repositories for intro_to_wc_modeling
Users that are interested in intro_to_wc_modeling are comparing it to the libraries listed below
Sorting:
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 5 months ago
- Rule-based modeling framework☆65Updated 3 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 2 weeks ago
- A Python toolbox for COPASI☆13Updated last year
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆113Updated this week
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆28Updated last year
- Software for in silico evolution - Paul François' group McGill University☆10Updated 3 years ago
- A Versatile and Open Source One- and Two-Photon Light-Sheet Microscope Design☆11Updated 2 years ago
- GPU-accelerated multicellular modelling framework☆66Updated 4 months ago
- Build-A-Cell protocol for making liposomes☆13Updated last year
- Python Environment for Modeling and Simulating Biological Systems☆123Updated 2 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Core Interface and Engine for Vivarium 1.0☆33Updated 9 months ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- ☆32Updated 2 months ago
- Interactive, particle-based physics, chemistry and biology modeling and simulation environment☆23Updated 2 months ago
- SWIG-Python wrappers implementing SBOL 2.2☆25Updated 3 years ago
- Boolean Network Modeling☆40Updated 5 years ago
- Online material for the Perspective: "Julia for Biologists" presented at JuliaCon 2021: https://www.youtube.com/watch?v=gRj7E5kYG1I☆100Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 3 weeks ago
- Software tool for metabolic modelling in Systems Biology☆10Updated 4 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆26Updated this week
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆30Updated 2 years ago
- ☆13Updated 4 years ago
- Modeling Latent Flow Structure using Hodge Decomposition☆13Updated 6 months ago
- ☆31Updated 4 years ago
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- Python framework for Systems Biology modeling☆185Updated last month
- Simulation platform of animal embryogenesis☆20Updated 3 years ago