KarrLab / intro_to_wc_modelingLinks
Whole-cell modeling tutorials
☆16Updated 5 years ago
Alternatives and similar repositories for intro_to_wc_modeling
Users that are interested in intro_to_wc_modeling are comparing it to the libraries listed below
Sorting:
- Rule-based modeling framework☆63Updated last month
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 2 months ago
- MathIOmica is a Mathematica package for omics data analyses☆12Updated last year
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 3 months ago
- Python framework for multi-parameter optimization and evaluation of protein folding models☆17Updated 4 years ago
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- Boolean Network Modeling☆40Updated 5 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆19Updated this week
- Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology☆31Updated 5 months ago
- ☆31Updated 3 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 5 years ago
- ☆32Updated last week
- Python utilities for SBML☆41Updated last month
- Toolkit for discovering and aggregating data for whole-cell modeling☆15Updated 3 years ago
- Spatial computation☆20Updated 3 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆112Updated last week
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- C++ implementation of SBOL 2.3.2☆16Updated 4 years ago
- A Python toolbox for COPASI☆13Updated last year
- Semantic Reader of the Scientific Literature☆12Updated 2 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated 2 months ago
- MCell Monte Carlo Simulator of Cellular Microphysiology☆35Updated 2 months ago
- ☆12Updated 10 years ago
- Piece-wise Linear curves converted to point-clouds, analysed with Persistent Homology, represented as HyperGraphs.☆16Updated 3 months ago
- A Versatile and Open Source One- and Two-Photon Light-Sheet Microscope Design☆11Updated last year
- A knowledge resource on cell lines - From SIB CALIPHO group☆14Updated last year
- Network inference by fusing data from diverse distributions☆14Updated 8 years ago
- Python code to extract features from Protein sequences for Machine Learning/Deep Learning☆19Updated 3 years ago