KarrLab / intro_to_wc_modelingLinks
Whole-cell modeling tutorials
☆17Updated 5 years ago
Alternatives and similar repositories for intro_to_wc_modeling
Users that are interested in intro_to_wc_modeling are comparing it to the libraries listed below
Sorting:
- Rule-based modeling framework☆66Updated 8 months ago
- Software for in silico evolution - Paul François' group McGill University☆10Updated 3 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆29Updated 10 months ago
- Dynamic Flux Balance analysis in Python☆11Updated 10 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆123Updated last week
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 5 months ago
- 2022 PhysiCell Hackathon and Workshop☆12Updated 3 years ago
- Build-A-Cell protocol for making liposomes☆13Updated 2 years ago
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 7 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Software tool for metabolic modelling in Systems Biology☆10Updated 5 years ago
- A Python toolbox for COPASI☆13Updated last year
- SWIG-Python wrappers implementing SBOL 2.2☆25Updated 4 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 5 years ago
- Python Environment for Modeling and Simulating Biological Systems☆131Updated 2 months ago
- Python utilities for SBML☆41Updated 2 weeks ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆30Updated this week
- ☆19Updated 2 months ago
- Python framework for Systems Biology modeling☆189Updated 6 months ago
- Boolean Network Modeling☆40Updated 6 years ago
- Introduction to Biophysics, requires one semester of calculus-based Physics.☆28Updated 2 years ago
- Core Interface and Engine for Vivarium 1.0☆34Updated last year
- ☆34Updated 7 months ago
- GPU-accelerated multicellular modelling framework☆71Updated 9 months ago
- Coral, a library and framework for specifying synthetic biology design processes.☆34Updated 3 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 6 years ago
- Computation of Microbial Ecosystems in Time and Space☆26Updated 2 months ago
- ☆31Updated 4 years ago
- Modeling Latent Flow Structure using Hodge Decomposition☆16Updated 10 months ago