Alternatives and similar repositories for pycotools3:

Users that are interested in pycotools3 are comparing it to the libraries listed below

• AnabelSMRuggiero / sbmltoodepy
  A tool for creating Python implementations of SBML models.
  ☆13Updated 2 years ago
• JuBiotech / calibr8
  Toolbox for non-linear calibration modeling.
  ☆24Updated 4 months ago
• sbmlteam / sbml-test-suite
  The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…
  ☆24Updated last year
• lanl / PyBNF
  An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…
  ☆24Updated last year
• sbmlteam / python-libsbml
  Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.
  ☆22Updated 5 months ago
• KarrLab / intro_to_wc_modeling
  Whole-cell modeling tutorials
  ☆16Updated 4 years ago
• PySCeS / pysces
  The official PySCeS project source code repository.
  ☆38Updated 3 months ago
• LoLab-MSM / pyvipr
  Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML
  ☆27Updated 2 years ago
• sys-bio / antimony
  ☆18Updated this week
• matthiaskoenig / cy3sbml
  cy3sbml: SBML for Cytoscape 3
  ☆14Updated last week
• ICB-DCM / parPE
  Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
  ☆21Updated last month
• sys-bio / roadrunner
  libRoadRunner: A high-performance SBML simulator
  ☆46Updated 2 weeks ago
• avramidis / sodecl
  SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.
  ☆10Updated 4 years ago
• sbmlteam / moccasin
  MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.
  ☆12Updated 7 months ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• RuleWorld / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆14Updated 10 months ago
• matthiaskoenig / dfba
  Encoding Dynamic Flux Balance Analysis in SBML
  ☆11Updated 4 years ago
• Data2Dynamics / d2d
  a modeling environment tailored to parameter estimation in dynamical systems
  ☆59Updated this week
• NIH-HPC / python-in-hpc
  Materials for a Python in HPC class
  ☆34Updated 5 years ago
• opencobra / driven
  Data-Driven Constraint-based analysis
  ☆12Updated 2 years ago
• copasi / basico
  A simplified python interface to COPASI.
  ☆20Updated last month
• bjodah / pycvodes
  Python wrapper around cvodes (from the sundials library)
  ☆34Updated 2 months ago
• RuleWorld / BNGTutorial
  Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.
  ☆15Updated last year
• quantumbrake / cayenne
  Python package for stochastic simulations
  ☆17Updated last week
• StochSS / GillesPy2
  Modeling toolkit for biochemical simulation
  ☆74Updated 2 months ago
• msneddon / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆17Updated 10 months ago
• alubbock / microbench
  Benchmarking and metadata tracking for Python. Extensible, with distributed/cluster support.
  ☆16Updated 7 months ago
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆21Updated this week
• mglerner / IntroToBiophysics
  Introduction to Biophysics, requires one semester of calculus-based Physics.
  ☆26Updated last year
• citation-file-format / doi2cff
  Generate a CFF file using the metadata from a software release on Zenodo.
  ☆21Updated 2 years ago