A Python toolbox for COPASI
☆13Jun 5, 2024Updated last year
Alternatives and similar repositories for pycotools3
Users that are interested in pycotools3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simplified python interface to COPASI.☆26Mar 19, 2026Updated 2 months ago
- Deprecated: please use GillesPy2☆12Oct 15, 2019Updated 6 years ago
- Signaling Pathway Visualizer☆10Jun 22, 2019Updated 6 years ago
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆30Mar 29, 2025Updated last year
- Tools for programming chemical reaction networks (CRN), DNA strand-displacement circuits (DSD) and genetically engineered circuits (GEC).…☆28Apr 22, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A python library to conjugate spanish words with parameters tense, mood and pronoun☆16Apr 21, 2025Updated last year
- Karel Codes☆30Sep 10, 2023Updated 2 years ago
- Selecting features as (network) nodes☆11May 27, 2018Updated 7 years ago
- pytest-plus adds new features to pytest☆12Oct 27, 2025Updated 6 months ago
- Whole-cell modeling tutorials☆17Jun 26, 2020Updated 5 years ago
- A domain-specific language that allows the expression or protein interactions that can be used to build executable models.☆23Dec 13, 2022Updated 3 years ago
- ☆11Sep 21, 2025Updated 8 months ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated 2 months ago
- Example of clingo usage on website as a client-side JS program☆14Aug 27, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10May 11, 2021Updated 5 years ago
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 2 months ago
- A proposed workflow for using Git subtree with shared code☆20May 28, 2012Updated 13 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆127May 13, 2026Updated last week
- Differentiable interface to FEniCS for PyMC3☆21Nov 28, 2022Updated 3 years ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆15May 12, 2026Updated last week
- QUESO is a C++ library for doing uncertainty quantification. QUESO stands for Quantification of Uncertainty for Estimation, Simulation a…☆60Aug 8, 2019Updated 6 years ago
- Benchmarking study of recent covariate-adjusted FDR methods☆16Apr 16, 2019Updated 7 years ago
- Resources for configuring VSCodium for writing in LaTeX, Markdown, and Python.☆20Nov 6, 2025Updated 6 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- C++ Template Linear Algebra PACKage☆53Updated this week
- python Parameter EStimation TOolbox☆273Updated this week
- Module to create static html reports☆14Jul 2, 2024Updated last year
- python reader for Andor sif file☆13Sep 28, 2020Updated 5 years ago
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Dec 15, 2025Updated 5 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 5 months ago
- The Density Functional Theory for Electrolyte Solutions☆10Sep 13, 2022Updated 3 years ago
- Verimag Polyhedra Library☆19Apr 11, 2025Updated last year
- Automatic differentiation of FEniCS and Firedrake models in Julia☆14Mar 21, 2021Updated 5 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 3 weeks ago
- Wrap Python functions and shell commands as content-addressed transformations. Cache results, run them locally or on a cluster, and share…☆23May 6, 2026Updated 2 weeks ago
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆47Mar 27, 2020Updated 6 years ago
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆24Mar 15, 2018Updated 8 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago
- A Sparse Set in rust.☆33Oct 22, 2022Updated 3 years ago
- libRoadRunner: A high-performance SBML simulator☆60Mar 26, 2026Updated last month