A Python toolbox for COPASI
☆13Jun 5, 2024Updated 2 years ago
Alternatives and similar repositories for pycotools3
Users that are interested in pycotools3 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A simplified python interface to COPASI.☆28Jun 15, 2026Updated 2 weeks ago
- A Python Framework for Modeling and Analysis of Signaling Systems☆29May 25, 2026Updated last month
- BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Estimation)☆30Mar 29, 2025Updated last year
- Tools for programming chemical reaction networks (CRN), DNA strand-displacement circuits (DSD) and genetically engineered circuits (GEC).…☆28Apr 22, 2023Updated 3 years ago
- A tool for creating Python implementations of SBML models.☆15Oct 5, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Terminal-based AI coding assistant powered by Ollama - a FLOSS alternative to Claude Code that keeps your code local☆16Dec 16, 2025Updated 6 months ago
- ☆21Apr 4, 2026Updated 2 months ago
- Selecting features as (network) nodes☆11May 27, 2018Updated 8 years ago
- pytest-plus adds new features to pytest☆12Oct 27, 2025Updated 8 months ago
- Whole-cell modeling tutorials☆17Jun 26, 2020Updated 6 years ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Mar 9, 2026Updated 3 months ago
- Example of clingo usage on website as a client-side JS program☆14Aug 27, 2019Updated 6 years ago
- View biological networks via Cytoscape.js and sbgn-ml☆70Feb 9, 2021Updated 5 years ago
- ☆10May 11, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Repository of the pipeline of computational methods for logical modelling of biological networks that are deregulated in diseases, develo…☆10Mar 14, 2026Updated 3 months ago
- Reasoning on the response of logical signaling networks with Answer Set Programming☆15Feb 10, 2026Updated 4 months ago
- An R shiny app to explore the influence of the normality and independence assumptions (and their violation) on the validity (i.e. the typ…☆13Aug 24, 2020Updated 5 years ago
- A proposed workflow for using Git subtree with shared code☆20May 28, 2012Updated 14 years ago
- Differentiable interface to FEniCS for PyMC3☆21Nov 28, 2022Updated 3 years ago
- COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.☆129Updated this week
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆15Jun 5, 2026Updated 3 weeks ago
- A starting point for your custom Dockerfile that works on binder. You probably don't want to use this.☆21Dec 16, 2021Updated 4 years ago
- Synthesis and Reprogramming of Most Permissive Boolean Networks☆16Jun 19, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- QUESO is a C++ library for doing uncertainty quantification. QUESO stands for Quantification of Uncertainty for Estimation, Simulation a…☆60Aug 8, 2019Updated 6 years ago
- Resources for configuring VSCodium for writing in LaTeX, Markdown, and Python.☆20Nov 6, 2025Updated 7 months ago
- C++ Template Linear Algebra PACKage☆56Jun 24, 2026Updated last week
- python Parameter EStimation TOolbox☆273Jun 22, 2026Updated last week
- A modular compiler for biological chemical reaction networks☆53May 10, 2026Updated last month
- Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.☆21Dec 15, 2025Updated 6 months ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆27Dec 3, 2025Updated 6 months ago
- The Density Functional Theory for Electrolyte Solutions☆10Sep 13, 2022Updated 3 years ago
- Python implementation of the main algorithms of the Learning From Interpretation Transitions (LFIT) framework☆17Apr 28, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Verimag Polyhedra Library☆19Apr 11, 2025Updated last year
- Automatic differentiation of FEniCS and Firedrake models in Julia☆14Mar 21, 2021Updated 5 years ago
- Repository of tutorials for The COBRA Toolbox☆25Apr 27, 2026Updated 2 months ago
- Wrap Python functions and shell commands as content-addressed transformations. Cache results, run them locally or on a cluster, and share…☆24Jun 22, 2026Updated last week
- Graph regularized nonnegative matrix factorization (GNMF) in Python☆47Mar 27, 2020Updated 6 years ago
- a C library for symbolic and numerical analysis of a system of ordinary differential equations (ODEs) derived from a chemical reaction ne…☆24Mar 15, 2018Updated 8 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Nov 22, 2017Updated 8 years ago