CiaranWelsh / pycotools3Links
A Python toolbox for COPASI
☆13Updated last year
Alternatives and similar repositories for pycotools3
Users that are interested in pycotools3 are comparing it to the libraries listed below
Sorting:
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Whole-cell modeling tutorials☆16Updated 5 years ago
- The SBML Test Suite is a conformance testing system. It allows developers and users to test the degree and correctness of the SBML suppor…☆26Updated 3 months ago
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆12Updated last year
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆14Updated 2 months ago
- cy3sbml: SBML for Cytoscape 3☆14Updated 3 weeks ago
- Standalone Python package containing libSBML with support for SBML Level 3 Core and accepted SBML Level 3 packages.☆23Updated last month
- StochPy is a versatile stochastic modeling package which is designed for stochastic simulation of molecular control networks☆42Updated 5 months ago
- A tool for creating Python implementations of SBML models.☆15Updated 3 years ago
- Rule-based modeling framework☆65Updated 5 months ago
- ☆19Updated this week
- SODECL is a library of ordinary differential equation (ODE) and stochastic differential equation (SDE) solvers in OpenCL.☆11Updated 5 years ago
- a modeling environment tailored to parameter estimation in dynamical systems☆62Updated 3 months ago
- Models that demonstrate the syntax and functionality of BioNetGen language and simulation tools.☆15Updated 2 years ago
- Load mass spectrometry mzXML files☆17Updated 3 years ago
- Documentation, models and code relating to the 3rd edition of the textbook Stochastic Modelling for Systems Biology☆32Updated 3 weeks ago
- libRoadRunner: A high-performance SBML simulator☆55Updated this week
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated 3 months ago
- Biological file format specimens for testing packages, and functions to assist in testing.☆15Updated this week
- Benchmarking and metadata tracking for Python. Extensible, with distributed/cluster support.☆20Updated 3 weeks ago
- Collection of National Science Foundation (NSF) proposal templates: pitches, general applications, etc.☆15Updated 2 years ago
- Use LSTM neural network for 1D distributional data prediction☆22Updated 3 years ago
- GenSSI 2.0 - Generating Series for testing Structural Identifiability☆15Updated last year
- Python wrapper for the GR framework☆31Updated 3 months ago
- Boolean Network Modeling☆40Updated 5 years ago
- High-performance sensitivity analysis for large ordinary differential equation models☆127Updated this week
- Generic methods, types and modules for the BioJulia ecosystem.☆12Updated last year
- A flux balance analysis machine learning classifier for microbial GWAS☆14Updated 5 years ago
- Fast and flexible code for solving the inverse Ising/Potts inference problem☆27Updated 2 years ago
- Causal and probabilistic reasoning with continuous time dynamical systems☆19Updated 2 months ago