Alternatives and similar repositories for nfsim

Users that are interested in nfsim are comparing it to the libraries listed below

• RuleWorld / bionetgen
  Rule-based modeling framework
  ☆63Updated last month
• amirpandi / METIS
  METIS: A versatile active learning workflow for optimization of genetic and metabolic networks
  ☆30Updated 2 years ago
• msneddon / nfsim
  A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
  ☆17Updated last year
• SBRG / pymodulon
  Python package for analyzing and visualizing iModulons
  ☆13Updated 3 weeks ago
• pstjohn / dFBA
  Dynamic Flux Balance analysis in Python
  ☆11Updated 9 years ago
• mims-harvard / SPECTRA
  SPECTRA: Spectral framework for evaluation of biomedical AI models
  ☆40Updated 4 months ago
• PhysiBoSS / PhysiBoSS
  PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks
  ☆26Updated this week
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆29Updated last year
• SBRG / MASSpy
  ☆24Updated 2 years ago
• SBRG / cobrame
  A COBRApy extension for genome-scale models of metabolism and expression (ME-models)
  ☆35Updated 6 years ago
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• ZhangGroup-MITChemistry / DRAGON
  ☆12Updated 2 years ago
• erolkavvas / metabolic-allele-classifiers
  A flux balance analysis machine learning classifier for microbial GWAS
  ☆14Updated 5 years ago
• ELELAB / MAVISp
  the MAVISp database for annotations and predictions of variant effects at the protein level
  ☆11Updated this week
• i2bc / SCAN_IDR
  ☆12Updated last year
• nh2tran / DeepNovoAA
  DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.
  ☆12Updated 4 years ago
• MICommunity / ComplexViewer
  web based visualisation of molecular interaction data
  ☆12Updated last month
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆21Updated 6 years ago
• debbiemarkslab / MuE
  A package for making MuE observation models in Edward2.
  ☆13Updated 4 years ago
• hetio / xswap
  Python library (C++ backend) for degree-preserving network randomization
  ☆14Updated 5 years ago
• CovertLab / wcEcoli
  Whole Cell Model of E. coli
  ☆27Updated last week
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆26Updated last year
• Singh-Lab / DeMaSk
  Prediction of protein substitution impact using a directional substitution matrix and homolog alignments
  ☆12Updated 3 years ago
• rcsb / rcsb-saguaro-3d
  ☆30Updated last month
• pirl-unc / mhcgnomes
  Parsing MHC nomenclature in the wild
  ☆17Updated 3 months ago
• vicruiser / 3Dmapper
  Map genetic variants and protein positions to protein interfaces in 3D
  ☆13Updated last year
• allydunham / aa_subtypes
  Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
  ☆11Updated 3 years ago
• PDBeurope / PDBe_Programming
  PDBe Programming Interfaces information
  ☆14Updated 6 years ago
• IdoSpringer / ERGO
  ERGO is a deep learing based model for predicting TCR-peptide binding.
  ☆18Updated 2 years ago