RuleWorld / nfsimLinks
A general-purpose, stochastic, biochemical reaction simulator for large reaction networks
☆14Updated 3 months ago
Alternatives and similar repositories for nfsim
Users that are interested in nfsim are comparing it to the libraries listed below
Sorting:
- Rule-based modeling framework☆64Updated 2 months ago
- A general-purpose, stochastic, biochemical reaction simulator for large reaction networks☆17Updated last year
- Dynamic Flux Balance analysis in Python☆11Updated 9 years ago
- METIS: A versatile active learning workflow for optimization of genetic and metabolic networks☆30Updated 2 years ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆26Updated this week
- A COBRApy extension for genome-scale models of metabolism and expression (ME-models)☆35Updated 6 years ago
- Encoding Dynamic Flux Balance Analysis in SBML☆12Updated 4 years ago
- Repository of tutorials for The COBRA Toolbox☆22Updated 2 weeks ago
- ☆24Updated 2 years ago
- ☆12Updated 2 years ago
- Whole-cell modeling tutorials☆16Updated 5 years ago
- cy3sbml: SBML for Cytoscape 3☆14Updated this week
- Whole cell model of E. coli implemented with Vivarium☆22Updated this week
- web based visualisation of molecular interaction data☆12Updated 2 months ago
- Software for in silico evolution - Paul François' group McGill University☆10Updated 3 years ago
- ☆14Updated 9 years ago
- Jupyter widget for the dynamic and static visualizations of systems biology models written in PySB, BNGL, and SBML☆27Updated 2 years ago
- Methods for mapping genomic data onto 3D protein structure.☆28Updated 3 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆29Updated 7 years ago
- Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure☆12Updated 11 months ago
- A flux balance analysis machine learning classifier for microbial GWAS☆14Updated 5 years ago
- A Python toolbox for COPASI☆13Updated last year
- An application for parameterization of biological models available in SBML and BNGL formats. Features include parallelization, metaheuris…☆24Updated last week
- Coral, a library and framework for specifying synthetic biology design processes.☆33Updated 2 years ago
- State-of-the-art ab initio prediction of 1D protein structure annotations☆14Updated 4 years ago
- Python library (C++ backend) for degree-preserving network randomization☆14Updated 5 years ago
- ☆11Updated last month
- Interpretable genotype-phenotype landscape modeling☆35Updated last year
- topological data analysis of population-scale microbiomes☆31Updated 2 years ago
- Python package for analyzing and visualizing iModulons☆13Updated last month