PhanstielLab / bedtoolsr
R package wrapping bedtools
☆37Updated 2 months ago
Related projects ⓘ
Alternatives and complementary repositories for bedtoolsr
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- An R interface to the MEME Suite☆46Updated last month
- Software for preprocessing, filtering, alignment, and reporting of smallRNA-seq datasets☆22Updated last year
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- This github repository contains code to reproduce the analysis in our paper "Variability in estimated gene expression among commonly used…☆27Updated 10 months ago
- Isoform-level functional RNA-Seq analysis 🧬☆20Updated last week
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Tutorials covering various topics in genomic data analysis.☆16Updated 5 years ago
- A tidy interface for coverage analysis☆24Updated 4 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated last month
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- An R for fast and flexible DNA methylation analysis☆30Updated 3 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 5 years ago
- Summer school course materials collection☆25Updated 6 years ago
- Reduce + Visualize Gene Ontology☆22Updated 2 weeks ago
- HOT regions paper☆11Updated 5 years ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago
- workshop website on readthedocs☆19Updated last week
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 2 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆34Updated last year
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆26Updated last month
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- documentation for trackViewer☆29Updated 5 years ago
- Motif manipulation functions for R.☆25Updated last week
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated last year