R package wrapping bedtools
☆45Mar 19, 2025Updated last year
Alternatives and similar repositories for bedtoolsr
Users that are interested in bedtoolsr are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 4 months ago
- Create QC and summary reports for Alevin output☆31Updated this week
- ggplot2 version of heatmap☆93Mar 16, 2023Updated 3 years ago
- GENome Organisation Visual Analytics☆90Feb 3, 2026Updated 2 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An R interface to the MEME Suite☆54Jan 7, 2026Updated 3 months ago
- Drosophila transposable element canonical sequences☆30Jul 11, 2022Updated 3 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆92Jan 26, 2023Updated 3 years ago
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆30Dec 13, 2024Updated last year
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- A comprehensive pipeline for Ribo-seq data analysis☆11Jun 27, 2025Updated 10 months ago
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 5 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- Writing a custom connection for R☆16May 15, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- single-cell analysis workflows for double phosphoramidite barcode and UMI Correction (scCOLOR-seq)☆13Jul 13, 2023Updated 2 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 8 months ago
- Repo for downloading and storing OMIM data☆19Oct 6, 2016Updated 9 years ago
- chloroplast genome assembly using long reads data☆16Jul 8, 2025Updated 9 months ago
- Quantifying copy number signatures from absolute copy number profiles☆27Jul 23, 2025Updated 9 months ago
- A modular, containerized pipeline for PRO-seq data processing☆11Mar 6, 2026Updated last month
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Mar 26, 2026Updated last month
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- An effective alignment tool for long noisy 3C data (e.g. Pore-C and C-walk)☆15Oct 23, 2024Updated last year
- Venn Diagram by ggplot2, with really easy-to-use API.☆182Oct 13, 2025Updated 6 months ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- Decomposition of heterogeneous DNA methylomes☆23Jul 10, 2024Updated last year
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- A single-cell RNA-seq pipeline☆27Apr 12, 2023Updated 3 years ago
- ☆22Jul 30, 2025Updated 9 months ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Nov 5, 2020Updated 5 years ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Updated this week
- Guangchuang Yu's CV☆43Feb 2, 2026Updated 3 months ago
- HiCDCPlus☆19Jun 6, 2022Updated 3 years ago
- Code related to the Celligner manuscript☆46Oct 30, 2020Updated 5 years ago
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago
- Pipeline for Analysis of ChIP-Seq data☆10May 8, 2024Updated last year