R package wrapping bedtools
☆44Mar 19, 2025Updated 11 months ago
Alternatives and similar repositories for bedtoolsr
Users that are interested in bedtoolsr are comparing it to the libraries listed below
Sorting:
- ggideogram is a ggplot2 extension package for drawing chromosome diagrams☆17Nov 29, 2024Updated last year
- An R Bioconductor package providing interactive connections to igv.js (the Integrative Genomics Viewer) in a web browser☆45Dec 17, 2025Updated 2 months ago
- ggplot2 version of heatmap☆91Mar 16, 2023Updated 2 years ago
- Create QC and summary reports for Alevin output☆31Jan 27, 2026Updated last month
- BICSEQ2 pipeline for processing CPTAC3 somatic WGS CNA☆16Apr 13, 2021Updated 4 years ago
- GENome Organisation Visual Analytics☆83Feb 3, 2026Updated 3 weeks ago
- A comprehensive pipeline for Ribo-seq data analysis☆11Jun 27, 2025Updated 8 months ago
- An R interface to the MEME Suite☆54Jan 7, 2026Updated last month
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- Quantifying copy number signatures from absolute copy number profiles☆27Jul 23, 2025Updated 7 months ago
- Repo for downloading and storing OMIM data☆19Oct 6, 2016Updated 9 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆92Jan 26, 2023Updated 3 years ago
- Drosophila transposable element canonical sequences☆29Jul 11, 2022Updated 3 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆42Jul 6, 2023Updated 2 years ago
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 7 months ago
- A modular, containerized pipeline for PRO-seq data processing☆11Updated this week
- ggplot2-based Manhattan plot☆12Oct 18, 2022Updated 3 years ago
- A pipeline for Smooth-seq data analysis.☆10Sep 23, 2021Updated 4 years ago
- Pipeline for Analysis of ChIP-Seq data☆10May 8, 2024Updated last year
- CReSIL: Accurate Identification of Extrachromosomal Circular DNA from Long-read Sequences☆12Aug 21, 2025Updated 6 months ago
- Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)☆15Jul 15, 2016Updated 9 years ago
- Venn Diagram by ggplot2, with really easy-to-use API.☆183Oct 13, 2025Updated 4 months ago
- Code related to the Celligner manuscript☆46Oct 30, 2020Updated 5 years ago
- R package to evaluate the reproducibility of Hi-C data☆27Jun 23, 2023Updated 2 years ago
- read and analyse RepeatMasker output☆27May 22, 2023Updated 2 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Collection of R functions used in the Hochwagen Lab☆12Aug 4, 2025Updated 6 months ago
- curly braces in ggplot2.☆13Jul 14, 2025Updated 7 months ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- Script used to identify de novo variants from sequencing data.☆11Mar 2, 2017Updated 8 years ago
- Guangchuang Yu's CV☆43Feb 2, 2026Updated last month
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆30Dec 13, 2024Updated last year
- A single-cell RNA-seq pipeline☆26Apr 12, 2023Updated 2 years ago
- Basic operations on the space of numerical functions defined on the genome using lazy evaluators for flexibility and efficiency☆154Nov 6, 2024Updated last year
- A tidyverse and grammar of graphics powered line traces visualizer☆30Sep 3, 2025Updated 5 months ago
- 🧠 Visualizing Single Cell and Spatial Transcriptomics☆51Nov 1, 2025Updated 4 months ago
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Oct 1, 2021Updated 4 years ago
- ☆11Mar 25, 2019Updated 6 years ago