suchapalaver / krust
Bioinformatics 101 tool for counting unique k-length substrings in DNA
☆30Updated last year
Related projects ⓘ
Alternatives and complementary repositories for krust
- Iterate over minimizers of a DNA sequence☆26Updated 3 months ago
- Fast and exact gap-affine partial order alignment☆40Updated last week
- A FASTA/FASTQ format parser library☆20Updated 8 months ago
- A long read simulator based on badread idea☆20Updated 2 years ago
- Generate random test data for bioinformatics☆25Updated 4 months ago
- Rust wrapper for the next generation (still currently in C++)☆20Updated last week
- Rust bindings to minimap2 library☆65Updated 2 months ago
- ntHash implementation in Rust☆34Updated 3 months ago
- Optimal sequence-to-graph alignment with recombinations☆24Updated 3 months ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆22Updated 2 years ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆43Updated last month
- Wavefront alignment algorithm (WFA) in Golang☆30Updated last week
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 4 months ago
- convert variation graph alignments to coverage maps over nodes☆21Updated this week
- GBWT in Rust☆42Updated 2 months ago
- Fulgor is a fast and space-efficient colored de Bruijn graph index.☆43Updated this week
- Compacted and colored de Bruijn graph construction and querying☆74Updated this week
- Long read aligner for cyclic and acyclic pangenome graphs☆35Updated 10 months ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- Benchmarking pairwise aligners☆36Updated 7 months ago
- Drug Resistance Prediction with Reference Graphs☆19Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 8 months ago
- k-mers and the like☆15Updated this week
- Rust UMI Directional Adjacency Deduplicator☆14Updated 4 years ago
- implicit pangenome graph☆42Updated this week
- Contains the description of a file format to store kmers and associated values☆31Updated 2 years ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆21Updated last month
- Approximate nearest neighbour search for microbial genomes based on hash metric☆43Updated last week
- sequence to graph mapper☆11Updated 3 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆16Updated this week