BlueBrain / atlas-alignmentLinks
Blue Brain multi-modal registration and alignment toolbox
☆11Updated last year
Alternatives and similar repositories for atlas-alignment
Users that are interested in atlas-alignment are comparing it to the libraries listed below
Sorting:
- 2D image registration in python, using napari.☆16Updated 3 years ago
- CloudReg☆11Updated last year
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆17Updated 2 weeks ago
- Standalone cellfinder cell detection algorithm☆20Updated last year
- Process images using SimpleITK in napari☆22Updated 5 months ago
- Image mapping using the LDDMM algorithm, implemented in tensorflow☆17Updated 4 years ago
- Get Your Brain Together Neuroimage Registration Workshops and Hackathons☆21Updated 11 months ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Script that registers Histology slices to volumetric image data☆11Updated 2 years ago
- 3D shape analysis using deep learning☆28Updated 3 weeks ago
- Segmentation of anatomical structures in a common coordinate space☆33Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- Lattice light-sheet post-processing utility.☆29Updated 3 weeks ago
- Loading and saving of image data.☆10Updated last year
- A python toolbox for locating and exporting brain regions from mouse brain images.☆12Updated last year
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11Updated 4 years ago
- ☆23Updated last month
- Scalable Optical Flow-based Image Montaging and Alignment☆81Updated this week
- A self-supervised denoising algorithm.☆27Updated last year
- Visualise brainreg registration output☆10Updated 3 years ago
- Python package for deep learning based image to image transformation☆53Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- Online documentation and reference for CLIJ☆28Updated 4 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- ☆47Updated last week
- Optimize image processing workflows in napari☆18Updated 5 months ago
- MultiModal Big Image Data Sharing and Exploration☆17Updated 2 years ago
- Advanced Tool for Labeling And Segmentation☆39Updated last year
- C++ library and command-line software for processing and analysis of terabyte-scale volume images locally or on a computing cluster.☆56Updated 4 months ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago