antinos / Dimensionality_Reduction-ImageJLinks
Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji
☆12Updated 6 months ago
Alternatives and similar repositories for Dimensionality_Reduction-ImageJ
Users that are interested in Dimensionality_Reduction-ImageJ are comparing it to the libraries listed below
Sorting:
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated 2 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 6 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 7 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆11Updated 2 years ago
- ☆20Updated last month
- ☆13Updated 5 years ago
- MiC is an ImageJ plugin to compare segmentation masks☆19Updated 5 months ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated last year
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆25Updated 11 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆22Updated 11 months ago
- ☆21Updated last year
- Process and analyze surfaces using vedo in napari.☆25Updated last year
- The ImageJ wiki☆29Updated this week
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆16Updated 3 years ago
- A short course exploring several fun and useful notebooks and Napari widgets for deep learning with SAM, Cellpose, Stardist and friends.☆17Updated 6 months ago
- ☆12Updated 2 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- Napari plugin for vollseg☆15Updated 4 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- 3D shape analysis using deep learning☆28Updated last month
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 6 months ago
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆17Updated 4 months ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Updated 3 years ago
- ☆10Updated last year
- my first baby steps with Napari☆10Updated 5 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated 3 weeks ago
- Icons describing multiple microscopy techniques, as used by https://www.epfl.ch/research/facilities/ptbiop/equipment/☆11Updated 2 years ago
- ImgLib2/BDV implementation of Stitching for large datasets☆77Updated 2 weeks ago