ilastik / ilastik4ijLinks
ImageJ plugins to run ilastik workflows
☆25Updated 2 weeks ago
Alternatives and similar repositories for ilastik4ij
Users that are interested in ilastik4ij are comparing it to the libraries listed below
Sorting:
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆12Updated last year
- ☆51Updated 5 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated 5 months ago
- A place to collect information used in lectures, demos, workshops, etc.☆17Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- ☆20Updated last week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- StarDist plugin for napari☆39Updated last year
- Multiple file format reading directly into napari using pure Python☆38Updated last week
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 5 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆81Updated last week
- Imagej toolset to ease hyperstacks visualization and handling☆22Updated last year
- A module with convenience functions for writing Python code that interacts with OMERO.☆45Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆104Updated last week
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆29Updated 5 months ago
- ☆36Updated last year
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ☆12Updated 7 months ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆30Updated last week
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆79Updated 2 weeks ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 3 weeks ago
- PoL Bioimage Analysis Training School: GPU-Accelerated Image Analysis Track☆28Updated last year
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆12Updated 3 years ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 2 months ago
- This repository contains the materials for the University of Oxford DTC ONBI Image Analysis course☆18Updated 7 years ago
- ☆13Updated 2 weeks ago