ilastik / ilastik4ijLinks
ImageJ plugins to run ilastik workflows
☆26Updated 2 weeks ago
Alternatives and similar repositories for ilastik4ij
Users that are interested in ilastik4ij are comparing it to the libraries listed below
Sorting:
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ☆51Updated 7 months ago
- A collection of demonstration materials for MorphoLibJ.☆12Updated 2 years ago
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated last week
- ☆12Updated last year
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated last week
- Feature extraction for labeled objects in images using regionprops from scikit-image☆52Updated 7 months ago
- Accurate and efficient spot detection for microscopy data☆111Updated last week
- Multiple file format reading directly into napari using pure Python☆39Updated last month
- ImageJ macro for the analysis of foci (e.g. DNA damage) in nuclei/cells☆21Updated last week
- ☆91Updated last month
- StarDist plugin for napari☆38Updated last year
- ☆13Updated 8 months ago
- ☆20Updated last month
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆81Updated last week
- Image reading, metadata management, and image writing for Microscopy images in Python☆109Updated this week
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 7 months ago
- Generate markdown notebooks from ImageJ Macro☆26Updated 4 years ago
- ☆13Updated 2 weeks ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆82Updated 2 weeks ago
- Lectures for a napari training course☆51Updated 2 years ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆61Updated last year
- ☆16Updated 2 years ago
- Imagej toolset to ease hyperstacks visualization and handling☆23Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 7 months ago
- ☆36Updated last year
- Browse your OMERO database from within napari.☆39Updated last week
- A napari plugin for clustering objects according to their properties.☆87Updated last week