ImageJ plugins to run ilastik workflows
☆30Mar 9, 2026Updated 5 months ago
Alternatives and similar repositories for ilastik4ij
Users that are interested in ilastik4ij are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 6 months ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- StarDist plugin for ImageJ☆32May 9, 2022Updated 4 years ago
- ImageJ plugin suite for image feature extraction☆11Dec 17, 2015Updated 10 years ago
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Generate markdown notebooks from ImageJ Macro☆33Mar 17, 2021Updated 5 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆41Jun 29, 2026Updated last month
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated 2 years ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Aug 11, 2026Updated last week
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated last year
- ilastik plugin for napari☆15Mar 2, 2026Updated 5 months ago
- Napari plugin for custom analysis and visualization of lattice lightsheet and Oblique Plane Microscopy data. The plugin is optimized for …☆15Updated this week
- Materials for the "ImageJ/Fiji Level 2: Automation and batch processing using macros" course taught at the Wolfson Bioimaging Facility, U…☆13Jan 24, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ImageJ+ImageJ2 compatibility layer☆17May 7, 2026Updated 3 months ago
- The RAW function collection for working with circles☆13Jul 11, 2025Updated last year
- a free, open-source web app for annotating, training, and evaluating image understanding algorithms☆25Nov 23, 2021Updated 4 years ago
- R interface to the Bio-Formats library☆27May 1, 2024Updated 2 years ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- Teaching materials and outline for the Pasteur Bioimage Analysis vour☆17Jun 2, 2025Updated last year
- A place to collect information used in lectures, demos, workshops, etc.☆17Sep 26, 2024Updated last year
- ☆23Apr 1, 2026Updated 4 months ago
- ilastik-shell, applets, and workflows to string them together.☆405Aug 7, 2026Updated last week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ImageJ plugin for building figures☆16Sep 13, 2023Updated 2 years ago
- A Fiji plugin that automatically quantify synapses from multi-channel fluorescence microscopy images.☆20Aug 29, 2024Updated last year
- translate-pptx is a command line tool that translates PowerPoint PPTX files from one language to another.☆20Mar 9, 2025Updated last year
- ☆21Updated this week
- 3DMorph is a MATLAB-based script that analyzes microglia morphology from 3D data. Outputs include cell and territorial volume, branch len…☆14Jun 12, 2018Updated 8 years ago
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- A Fiji plugin for Curvature Analysis.☆14Aug 17, 2020Updated 6 years ago
- Resources for teaching/preparing to teach bioimage analysis☆63Aug 6, 2026Updated last week
- A RESTful web server for ImageJ [EXPERIMENTAL]☆40May 24, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Automatic Mobility Based Behavioral Quantification ( Forced Swim Test, Tail Suspension Test )☆21Jul 25, 2026Updated 3 weeks ago
- Connecting Java/ImgLib2 + Python/NumPy☆31Jun 17, 2026Updated 2 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆27Feb 17, 2025Updated last year
- Overview of the course, syllabus, etc.☆17Jun 4, 2024Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification