R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data
☆23Jun 17, 2021Updated 5 years ago
Alternatives and similar repositories for autospill
Users that are interested in autospill are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Scalable, downsampling-free automated cell-population discovery, feature engineering, classification and visualization of single-cell (mo…☆12Aug 30, 2021Updated 5 years ago
- Simplified script for applying the t-SNE diff method on high parameter flow cytometry data☆10Oct 31, 2023Updated 3 years ago
- An R package to produce full spectrum flow cytometry plots outside the acquisition software.☆11May 9, 2023Updated 3 years ago
- Interactive Cytometry Data Analysis☆70Mar 18, 2026Updated 7 months ago
- ☆19Apr 5, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A binary tree algorithm for automatic gating in cytometry analysis☆11Jul 26, 2025Updated last year
- Robust Integration of Single-Cell Cytometry Datasets☆38Apr 29, 2026Updated 6 months ago
- An R package for analyzing high-dimensional cytometry data using the tidyverse.☆20Aug 25, 2024Updated 2 years ago
- A computational toolkit in R for the integration, exploration, and analysis of high-dimensional single-cell cytometry and imaging data.☆71Sep 19, 2025Updated last year
- Spectral unmixing of highly mixed multispectral flow and image cytometry data.☆17Mar 15, 2023Updated 3 years ago
- Open Source Spectral Cytometer☆23Sep 30, 2026Updated last month
- ☆35Sep 23, 2026Updated last month
- Huge-scale, high-performance flow cytometry clustering in Julia☆36Nov 3, 2025Updated last year
- Cytometry dATa anALYsis Tools☆75Apr 28, 2026Updated 6 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package that integrates the installation, execution, and benchmark of cutting-edge computational doublet-detection methods.☆12Dec 4, 2022Updated 3 years ago
- ☆15Jan 16, 2024Updated 2 years ago
- flowWorkspace☆48May 27, 2026Updated 5 months ago
- An R package for correcting p-values for multiple hypothesis testing in comparative quantitative omics experiments using permutation-base…☆13Mar 11, 2026Updated 7 months ago
- Spatially-resolved Transcriptomics via Epitope Anchoring☆19Apr 1, 2024Updated 2 years ago
- Flow cytometry analysis workflow. The aim of this project is to provide an intuitive workflow for the analysis of high-dimensionality cyt…☆28Apr 29, 2026Updated 6 months ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- A package containing metrics for evaluating subpopulation identification in clusterings, embeddings, graphs and space.☆11Jan 23, 2026Updated 9 months ago
- ☆11Mar 2, 2021Updated 5 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- A 'ggplot2' extension that provides tools for automatically creating scales to focus on subgroups of the data plotted without removin…☆23Sep 14, 2025Updated last year
- A database of useful gene signatures for single-cell analysis☆30May 19, 2025Updated last year
- Single Cell Multiplexed Imaging Jupyter Voila Dashboard using CODEX Data☆17Jul 6, 2023Updated 3 years ago
- Calibrated clustering via knockoffs for single-cell genomics☆11Feb 13, 2025Updated last year
- SuperCell for Cytometry data☆13Oct 14, 2025Updated last year
- ☆16Jul 9, 2024Updated 2 years ago
- Automated ingestion and conversion of various single-cell data formats, within and across species☆16Jan 26, 2026Updated 9 months ago
- Rigorous integration of single-cell ATAC-seq data using regularized barycentric mapping☆11Aug 30, 2025Updated last year
- twosigma☆10Jun 8, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Library for generating Integra ViaLab files☆11Updated this week
- CODEX data processing code☆13Jul 1, 2025Updated last year
- R interface to the Pan-human Azimuth neural network for cell type annotation☆15Jul 29, 2026Updated 3 months ago
- ☆20Nov 13, 2021Updated 4 years ago
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆19Mar 7, 2024Updated 2 years ago
- Spatial Image Analysis of Tissues☆15Dec 8, 2022Updated 3 years ago
- Short example showing how to calculate and plot a 2D t-SNE projection from mass cytometry data in R☆17Nov 9, 2015Updated 10 years ago