ssadedin / bpipe
Bpipe - a tool for running and managing bioinformatics pipelines
☆234Updated 2 weeks ago
Alternatives and similar repositories for bpipe:
Users that are interested in bpipe are comparing it to the libraries listed below
- BEDOPS: high-performance genomic feature operations☆314Updated last year
- A curated collection of Nextflow implementation patterns☆339Updated last year
- a lightweight db framework for exploring genetic variation.☆317Updated 4 years ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆188Updated 5 months ago
- GenomicsDB☆111Updated 2 years ago
- BWK awk modified for biological data☆602Updated 2 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆219Updated 4 months ago
- Docker Images tracking the stable Galaxy releases.☆230Updated this week
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆369Updated last year
- Java utilities for Bioinformatics☆492Updated last week
- Count bases in BAM/CRAM files☆312Updated 3 years ago
- Interactive web-based genome browser.☆227Updated 5 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 5 years ago
- a toolkit for working with Oxford nanopore data☆242Updated 2 years ago
- Various algorithms for analysing genomics data☆210Updated this week
- High performance data storage for importing, querying and transforming variants.☆98Updated this week
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆243Updated 4 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆306Updated 8 months ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆91Updated this week
- A tool set for short variant discovery in genetic sequence data.☆195Updated 3 years ago
- Interval data structure☆231Updated 2 months ago
- ☆263Updated last week
- List of gene lists for genomic analyses.☆217Updated 2 years ago
- Text Only Genome Viewer!☆210Updated 6 months ago
- The Ensembl Core Perl API and SQL schema☆81Updated last week
- Tools for working with genomic and high throughput sequencing data.☆321Updated this week
- Detect and visualize target mutations by scanning FastQ files directly☆150Updated 3 years ago
- The Genome Modeling System installer☆78Updated 9 years ago