Bpipe - a tool for running and managing bioinformatics pipelines
☆242May 29, 2026Updated last month
Alternatives and similar repositories for bpipe
Users that are interested in bpipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a set of NGS pipelines☆24Jun 30, 2026Updated 3 weeks ago
- Peakzilla is a self-learning algorithm to identify transcription factor binding sites from ChIP-seq data. I would be very happy if you tr…☆21Aug 18, 2025Updated 11 months ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆99Apr 9, 2023Updated 3 years ago
- Next generation sequencing (NGS/HTS) tools.☆19Jan 25, 2024Updated 2 years ago
- samblaster: a tool to mark duplicates and extract discordant and split reads from sam files.☆242Aug 11, 2021Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Normalization and difference calling for Next Generation Sequencing (NGS) data via joint multinomial modeling.☆11May 21, 2026Updated 2 months ago
- Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis☆1,029Aug 24, 2024Updated last year
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- a lightweight db framework for exploring genetic variation.☆329Apr 28, 2020Updated 6 years ago
- Tools for early stage alignment file processing☆96Mar 12, 2019Updated 7 years ago
- RNA mapping pipeline☆19Jun 3, 2018Updated 8 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Mar 22, 2021Updated 5 years ago
- An application to remove PCR duplicates from high throughput sequencing runs.☆11Apr 22, 2018Updated 8 years ago
- MUltiScale enrIchment Calling for ChIP-Seq Datasets☆23Mar 14, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Infrastructure code to support DNA pipeline☆38May 5, 2015Updated 11 years ago
- Docker for Bioinformatics☆20Jul 5, 2026Updated 2 weeks ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL.☆14Nov 29, 2013Updated 12 years ago
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,479Jun 29, 2026Updated 3 weeks ago
- BigWig manpulation tools using libBigWig and htslib☆30Aug 8, 2024Updated last year
- BAM Statistics, Feature Counting and Annotation☆155Jul 1, 2026Updated 2 weeks ago
- Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊☆1,481Jan 8, 2026Updated 6 months ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Sep 6, 2016Updated 9 years ago
- Read visualizer for structural variants☆84Aug 18, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,581Jul 8, 2026Updated 2 weeks ago
- Hotspot is a program for identifying genomic regions of local enrichment of short-read sequence tags.☆16Apr 12, 2014Updated 12 years ago
- ☆11Oct 23, 2019Updated 6 years ago
- A C library for handling bigWig files☆83Jan 17, 2025Updated last year
- The open source version of the Melbourne Genomics Health Alliance Exome Sequencing Pipeline☆33Jan 20, 2018Updated 8 years ago
- CNV detection tool for targeted NGS panel data☆17Feb 28, 2022Updated 4 years ago
- yaha: a flexible, sensitive and accurate DNA alignment tool designed to find optimal split-read mappings on single-end queries from 100bp…☆20Dec 6, 2017Updated 8 years ago
- Gene fusion detection and visualization☆132Feb 21, 2022Updated 4 years ago
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A collection of modules and sub-workflows for Nextflow☆29Feb 13, 2026Updated 5 months ago
- A deletion finder through re-aligning the whole soft-clipping read☆12Jul 2, 2016Updated 10 years ago
- Gene Fusion Visualiser☆53Jan 15, 2023Updated 3 years ago
- Q ChIP-seq peak caller☆18Jul 17, 2024Updated 2 years ago
- A collection of well-known bioinformatics programs.☆25Apr 24, 2015Updated 11 years ago
- tools for error correction and working with long read data☆44Dec 1, 2014Updated 11 years ago
- A DSL for data-driven computational pipelines☆3,445Updated this week