ssadedin / bpipeLinks
Bpipe - a tool for running and managing bioinformatics pipelines
☆241Updated last month
Alternatives and similar repositories for bpipe
Users that are interested in bpipe are comparing it to the libraries listed below
Sorting:
- An app store for scientific workflows, tools, notebooks, and services☆130Updated this week
- Docker Images tracking the stable Galaxy releases.☆234Updated this week
- GenomicsDB☆110Updated 3 years ago
- Documentation of the Snakemake-Workflows project☆155Updated 3 years ago
- A curated collection of Nextflow implementation patterns☆367Updated 2 years ago
- a lightweight db framework for exploring genetic variation.☆323Updated 5 years ago
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆299Updated 7 years ago
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Updated 5 years ago
- A scalable genome browser. Apache 2 licensed.☆126Updated 3 years ago
- Galaxy Community Hub☆122Updated this week
- Educational materials for learning WDL☆131Updated last year
- The Ensembl Core Perl API and SQL schema☆83Updated this week
- BEDOPS: high-performance genomic feature operations☆356Updated 8 months ago
- Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training m…☆95Updated this week
- Genome data visualizations☆220Updated this week
- High performance data storage for importing, querying and transforming variants.☆99Updated 7 months ago
- Deprecated☆101Updated 6 years ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆245Updated 5 months ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆224Updated 3 months ago
- Nextflow Tower system☆151Updated 11 months ago
- NGS Language Bindings☆120Updated 2 years ago
- The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. …☆105Updated 3 years ago
- Browser for ExAC consortium data☆106Updated 3 years ago
- Interactive web-based genome browser.☆228Updated 6 years ago
- An Open Computational Genomics Analysis platform for big data genomics analysis. OpenCGA is maintained and develop by its parent company …☆176Updated this week
- Models and APIs for Genomic data. RETIRED 2018-01-24☆220Updated 3 years ago
- Bioconductor package "ballgown", devel version. Isoform-level differential expression analysis in R.☆148Updated 4 years ago
- CloudBioLinux: configure virtual (or real) machines with tools for biological analyses☆257Updated 2 years ago
- Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24☆99Updated 7 years ago
- The Pharmacogenomic Clinical Annotation Tool☆154Updated last month