ssadedin / bpipe
Bpipe - a tool for running and managing bioinformatics pipelines
☆235Updated last month
Alternatives and similar repositories for bpipe:
Users that are interested in bpipe are comparing it to the libraries listed below
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆219Updated 6 months ago
- FlowCraft: a component-based pipeline composer for omics analysis using Nextflow.☆244Updated 4 years ago
- a lightweight db framework for exploring genetic variation.☆320Updated 4 years ago
- A curated collection of Nextflow implementation patterns☆345Updated last year
- GenomicsDB☆111Updated 2 years ago
- BWK awk modified for biological data☆607Updated 2 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆371Updated last year
- BEDOPS: high-performance genomic feature operations☆319Updated last year
- Count bases in BAM/CRAM files☆315Updated 3 years ago
- Utilities for building and managing bioconda recipes☆98Updated this week
- Nextflow Tower system☆149Updated 2 months ago
- C++ API & command-line toolkit for working with BAM data☆422Updated 8 months ago
- Lollipop-style mutation diagrams for annotating genetic variations.☆189Updated 6 months ago
- FASTA/FASTQ pre-processing programs☆183Updated 3 years ago
- Documentation of the Snakemake-Workflows project☆153Updated 3 years ago
- Tools for working with genomic and high throughput sequencing data.☆324Updated last week
- Interactive web-based genome browser.☆227Updated 5 years ago
- genetic variant expressions, annotation, and filtering for great good.☆259Updated last month
- Browser for ExAC consortium data☆106Updated 3 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆322Updated 2 years ago
- Interval data structure☆231Updated 3 months ago
- Java utilities for Bioinformatics☆496Updated this week
- Extension for Jupyter which integrates igv.js☆154Updated 2 years ago
- A flexible framework for rapid genome analysis and interpretation☆316Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆267Updated last year
- DELLY2: Structural variant discovery by integrated paired-end and split-read analysis☆461Updated last month
- Official code repository for GATK versions 1.0 through 3.7 (core engine). For GATK 4 code, see the https://github.com/broadinstitute/gatk…☆294Updated 6 years ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation☆313Updated 10 months ago
- Spliced read mapper for RNA-Seq☆92Updated last year
- The Ensembl Core Perl API and SQL schema☆81Updated last month