leipzig / snakemake-exampleLinks
RNA-Seq Snakemake example with Jekyll homepage creation
☆20Updated 11 years ago
Alternatives and similar repositories for snakemake-example
Users that are interested in snakemake-example are comparing it to the libraries listed below
Sorting:
- Glimma R package☆50Updated 11 months ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87Updated 3 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- ☆22Updated 8 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- Transcript quantification import with automatic metadata detection☆68Updated this week
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆43Updated 9 years ago
- Response to blog post about Salmon☆37Updated 7 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated 3 years ago
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 10 years ago
- Companion repo for ExAC paper, 2015☆33Updated 8 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Genomic plot in trellis layout☆41Updated last year
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 6 years ago
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆34Updated 7 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.☆31Updated 7 years ago
- Q ChIP-seq peak caller☆18Updated last year
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated last month
- Tools for visualizing genomics data☆69Updated 3 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆31Updated 10 months ago
- Course materials for the edX Data Analysis for Genomics☆36Updated 10 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Devel repository for minfi☆61Updated last year