leipzig / snakemake-exampleLinks
RNA-Seq Snakemake example with Jekyll homepage creation
☆20Updated 11 years ago
Alternatives and similar repositories for snakemake-example
Users that are interested in snakemake-example are comparing it to the libraries listed below
Sorting:
- Glimma R package☆50Updated last year
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- A Practical (And Opinionated) Guide To Analyzing 450K Data☆35Updated 11 years ago
- Transcript quantification import with automatic metadata detection☆67Updated this week
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and he…☆87Updated 3 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 3 years ago
- Companion repo for ExAC paper, 2015☆33Updated 9 years ago
- RNA-seq quantifications: gene expression responses to human rhinovirus infection for 6 asthmatic and 6 non-asthmatic donors (SRP046226)☆19Updated 7 years ago
- ☆22Updated 8 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆43Updated this week
- A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor☆43Updated 9 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- ☆35Updated 9 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing☆61Updated 6 months ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 6 years ago
- A small R package to make sequencing read coverage plots in R.☆39Updated last week
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated last month
- Genomic plot in trellis layout☆41Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago