Alternatives and similar repositories for microarray-analysis

Users that are interested in microarray-analysis are comparing it to the libraries listed below

• hdng / clonevol
  Inferring and visualizing clonal evolution in multi-sample cancer sequencing
  ☆147Updated 5 years ago
• bcgsc / mirna
  microRNA profiling pipeline
  ☆79Updated 3 years ago
• hbc / bcbioRNASeq
  R package for bcbio RNA-seq analysis.
  ☆62Updated last year
• ENCODE-DCC / long-rna-seq-pipeline
  STAR based ENCODE Long RNA-Seq processing pipeline
  ☆95Updated 4 years ago
• bioinformatics-core-shared-training / ngs-in-bioc
  A course on Analysing Next Generation (/High Throughput etc..) Sequencing data using Bioconductor
  ☆43Updated 9 years ago
• srp33 / TCGA_RNASeq_Clinical
  ☆61Updated 5 years ago
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆93Updated 8 years ago
• cbg-ethz / NGS-pipe
  NGS-pipe: next-generation sequencing pipelines for precision oncology
  ☆114Updated 6 years ago
• thelovelab / tximport
  Transcript quantification import for modular pipelines
  ☆140Updated last month
• YeoLab / single-cell-bioinformatics
  Course material in notebook format for learning about single cell bioinformatics methods
  ☆99Updated 9 years ago
• kundajelab / phantompeakqualtools
  This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…
  ☆60Updated 5 years ago
• crazyhottommy / DNA-methylation-analysis
  DNA methylation analysis notes from Ming Tang
  ☆87Updated 6 years ago
• genome / sciclone
  An R package for inferring the subclonal architecture of tumors
  ☆122Updated last year
• crazyhottommy / pyflow-ChIPseq
  a snakemake pipeline to process ChIP-seq files from GEO or in-house
  ☆110Updated 5 years ago
• hbctraining / main
  ☆55Updated last week
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• seandavi / GEOquery
  The bridge between the NCBI Gene Expression Omnibus and Bioconductor
  ☆100Updated 2 weeks ago
• GenomiqueENS / eoulsan
  A pipeline and a framework for NGS analysis (RNA-seq and scRNA-seq)
  ☆54Updated 2 months ago
• chrisamiller / fishplot
  Create timecourse "fish plots" that show changes in the clonal architecture of tumors
  ☆170Updated 2 years ago
• obigriffith / biostar-tutorials
  Code for biostar tutorials - mostly R and Perl
  ☆50Updated last year
• TrinityCTAT / Trinity_CTAT
  ☆118Updated 2 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated 9 months ago
• BaderLab / Cytoscape_workflows
  collection of notebooks with different cytoscape workflows
  ☆50Updated 2 years ago
• thelovelab / rnaseqGene
  RNA-seq workflow: exploratory analysis and differential expression
  ☆79Updated last year
• bvieth / powsimR
  Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially ex…
  ☆106Updated 2 years ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆88Updated 5 years ago
• nunofonseca / irap
  integrated RNA-seq Analysis Pipeline
  ☆83Updated 6 years ago
• fpbarthel / GLASS
  GLASS consortium
  ☆42Updated 5 years ago
• andymckenzie / DGCA
  Differential Gene Correlation Analysis
  ☆45Updated last year
• indrops / indrops
  Pipeline for processing inDrops sequencing data
  ☆76Updated 6 years ago