Repository for the Anczukow-Lab splicing pipeline
☆17Mar 17, 2025Updated last year
Alternatives and similar repositories for splicing-pipelines-nf
Users that are interested in splicing-pipelines-nf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 3 months ago
- ☆19Jul 3, 2022Updated 3 years ago
- Learning resources originally for a class held December 2020 "Dry bench skills for Researchers". Expanding based upon mini-courses.☆11Jan 27, 2022Updated 4 years ago
- Nextflow implementation of the smoove workflow and other tools for SV calling and QC☆12Nov 12, 2020Updated 5 years ago
- ☆17Jul 19, 2024Updated last year
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆51Jan 18, 2023Updated 3 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 5 years ago
- Supplementary data for Petti, et al 2019 scRNA mutation publication☆16Feb 1, 2023Updated 3 years ago
- processes GoT amplicon data and generates a table of metrics☆32Jun 24, 2022Updated 3 years ago
- Displaying Strava stats on a Inky Impressions e-ink display☆13Jul 8, 2025Updated 9 months ago
- Code and figures accompanying the paper, "Single-cell alternative splicing analysis with Expedition reveals splicing dynamics during neu…☆20Jun 28, 2017Updated 8 years ago
- LongSom tool for long-reads☆11May 20, 2025Updated 10 months ago
- This repository contains the source code for the tappAS application. See README for details.☆21Mar 9, 2026Updated last month
- Genome Annotation for the Masses☆36Jul 9, 2017Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Dec 17, 2021Updated 4 years ago
- A conda-smithy repository for r-base.☆15Mar 17, 2026Updated last month
- Exercises for training scientists to perform some RNA-seq analyses.☆11Oct 7, 2019Updated 6 years ago
- Joint calling of gVCF, following GATK4 Best Practices☆12Apr 3, 2019Updated 7 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Mar 22, 2019Updated 7 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆57Jun 29, 2023Updated 2 years ago
- ☆14Feb 25, 2026Updated last month
- Comprehensive benchmark of structural variant callers☆49Feb 4, 2021Updated 5 years ago
- This repository contains course materials from JAX-BD2K workshop.☆32May 14, 2019Updated 6 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package for detecting differential distributions using a statistical test based on the wasserstein distance☆27Nov 7, 2025Updated 5 months ago
- ☆13Jan 12, 2024Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Mar 31, 2022Updated 4 years ago
- BPNet manuscript code.☆12Dec 1, 2020Updated 5 years ago
- Pipeline for processing inDrops sequencing data☆75Oct 26, 2018Updated 7 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆30Apr 10, 2023Updated 3 years ago
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆24Feb 12, 2020Updated 6 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Nov 6, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Annotation and segmentation of MAS-seq data☆20May 25, 2023Updated 2 years ago
- Pipelines for processing malaria parasite and mosquito genome sequence data.☆15Nov 2, 2024Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated last year
- ☆14Apr 22, 2022Updated 3 years ago
- Visualizing transcript structure and annotation using ggplot2☆167Aug 24, 2024Updated last year
- IsoVis enables fast and informative visualization of isoform structures and expression levels.☆13Apr 8, 2026Updated last week
- ☆27Mar 2, 2026Updated last month