TheJacksonLaboratory / splicing-pipelines-nf
Repository for the Anczukow-Lab splicing pipeline
☆14Updated last week
Alternatives and similar repositories for splicing-pipelines-nf:
Users that are interested in splicing-pipelines-nf are comparing it to the libraries listed below
- The Zavolab Automated RNA-seq Pipeline☆35Updated last week
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated 2 weeks ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆15Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 2 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- ☆33Updated 2 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆35Updated 3 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated 8 months ago
- ☆23Updated 3 months ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Genomic Association Tester☆30Updated last year
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- ☆21Updated 3 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆38Updated 3 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- Tool for RNA-Seq analysis.☆38Updated 2 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated this week
- Codes and Data for FFPEsig manuscript☆16Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆36Updated this week
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample☆31Updated 2 years ago