An R interface to the MEME Suite
☆54Jan 7, 2026Updated 5 months ago
Alternatives and similar repositories for memes
Users that are interested in memes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Simple R client to UCSC Xena data hubs☆10Jun 1, 2015Updated 11 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆21May 4, 2026Updated last month
- Blastocyst-like structures generated from human pluripotent stem cells☆13Sep 25, 2022Updated 3 years ago
- Modular package for generation of sets of ranges representing the null hypothesis. These can take the form of bootstrapped ranges (bootRa…☆28Nov 20, 2025Updated 6 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- R package wrapping bedtools☆46Mar 19, 2025Updated last year
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 3 years ago
- ATAC-seq processing pipeline☆34Apr 8, 2022Updated 4 years ago
- A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries☆12Jan 22, 2020Updated 6 years ago
- Motif manipulation functions for R.☆33Updated this week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Oct 14, 2025Updated 8 months ago
- Scripts and notebooks used in Akgol Oksuz et al. paper☆11Jan 18, 2021Updated 5 years ago
- A GAN-based method for Enhancing Hi-C data☆33Dec 17, 2020Updated 5 years ago
- SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances☆93Jan 26, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Detecting sites of genomic enrichment☆201May 8, 2023Updated 3 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆23Mar 30, 2024Updated 2 years ago
- Grid and ggplot2 based visualization for biological data☆116Apr 26, 2026Updated last month
- simpler single cell RNAseq data Visualization☆12Feb 28, 2025Updated last year
- Joint normalization of multiple Hi-C matrices, visualization and detection of differential chromatin interactions, supporting covariates.☆10Apr 22, 2022Updated 4 years ago
- ☆23May 6, 2024Updated 2 years ago
- ☆20Jun 8, 2023Updated 3 years ago
- ☆18Mar 12, 2024Updated 2 years ago
- Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs☆11Dec 21, 2019Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Template for a computational lab notebook using bookdown☆13Mar 16, 2018Updated 8 years ago
- GENome Organisation Visual Analytics☆91Feb 3, 2026Updated 4 months ago
- End-guided RNA assembler☆15Dec 2, 2025Updated 6 months ago
- LoopPredictor: Predicting unknown enhancer-mediated genome topology by an ensemble machine learning model☆14Jun 18, 2021Updated 4 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆98Jan 30, 2026Updated 4 months ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆24Feb 28, 2023Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆14Jun 10, 2021Updated 5 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 3 years ago
- Core Utils for Mass Spectrometry Data☆17May 11, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Source code for "Nucleosome plasticity is a critical element of chromatin liquid–liquid phase separation and multivalent nucleosome inter…☆13Jun 17, 2022Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Dec 8, 2021Updated 4 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆121Jul 11, 2025Updated 11 months ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆123Jan 15, 2023Updated 3 years ago
- ☆12Jul 19, 2019Updated 6 years ago
- Red-C data processing☆15Apr 18, 2023Updated 3 years ago
- single-cell and bulk RNA-seq analyses from counts → pathways → drug candidates.☆22Jan 22, 2026Updated 4 months ago