jaimicore / matrix-clustering_stand-aloneLinks
This is a stand-alone version of RSAT matrix-clustering. This version is faster and simplified compared to the original RSAT matrix-clustering but the graphical output is still under development.
☆9Updated 3 weeks ago
Alternatives and similar repositories for matrix-clustering_stand-alone
Users that are interested in matrix-clustering_stand-alone are comparing it to the libraries listed below
Sorting:
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆27Updated last month
- Clustering TF motif models from multiple species (mostly focused on Drosophila and human) by similarity to remove redundancy☆26Updated 2 years ago
- Long read to rMATS☆31Updated 2 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Updated 7 years ago
- Notes on ChIP-seq and other-seq-related tools☆26Updated 5 months ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- A python package for showing JBrowse views☆25Updated last year
- ☆26Updated 4 months ago
- Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing☆40Updated 11 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data☆31Updated 3 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆74Updated last month
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- ☆15Updated 2 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆28Updated last year
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆39Updated 2 weeks ago
- An R package to process and analyze transcriptomic data☆17Updated last week
- alternative splicing analysis pipeline☆19Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 4 months ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆27Updated 7 years ago
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated last month
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 5 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- Python package to analyze DNA methylation data☆42Updated 7 months ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆42Updated 6 months ago