anderssonrobin / enhancersLinks
Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci
☆14Updated last year
Alternatives and similar repositories for enhancers
Users that are interested in enhancers are comparing it to the libraries listed below
Sorting:
- ☆53Updated last year
- ☆48Updated last year
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- ☆25Updated 3 months ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Updated 7 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆61Updated 4 months ago
- ☆33Updated last year
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆82Updated 3 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year
- ☆12Updated 6 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- Data/analysis repository for "Interrogation of human hematopoiesis..." paper☆20Updated 6 years ago
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ☆14Updated 7 months ago
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆18Updated 4 years ago
- A Deep Learning-Based Model for Quantifying Transposable Elements in Single-Cell Sequencing Data☆32Updated last month
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated this week
- Scripts for the analysis of TT-seq and DRB/TT-seq data.☆11Updated 5 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆39Updated 5 months ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26Updated 7 years ago
- ☆87Updated 4 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated this week