anderssonrobin / enhancersLinks
Localization of transcribed enhancers and quntification of their usage from the initiation sites of bidirectionally transcribed loci
☆14Updated last year
Alternatives and similar repositories for enhancers
Users that are interested in enhancers are comparing it to the libraries listed below
Sorting:
- ☆48Updated last year
- ☆53Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Generate the UMI count matrix from CEL-Seq2 sequencing data☆19Updated 7 years ago
- This is a package and a shell script for alternative polyadenylation (APA) analysis of 3' tag single-cell RNA-seq data.☆24Updated 4 years ago
- ☆18Updated last year
- Scripts needed to generate the figures for the Monocle 2 paper (Qiu et al, 2017)☆29Updated 5 years ago
- ☆25Updated 3 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆26Updated last week
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- Analysis code for "Perturbation-response genes reveal signaling footprints in cancer gene expression"☆20Updated 7 years ago
- ☆40Updated 5 months ago
- Bioconductor package esATAC: an Easy-to-use Systematic pipeline for ATAC-seq data analysis☆23Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- A count based method for detecting doublets from single nucleus ATAC-seq (snATAC-seq) data.☆32Updated 3 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆83Updated 3 years ago
- Code and analysis pipeline for Smart-seq3 (Hagemann-Jensen et al. 2020).☆57Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆25Updated 3 years ago
- A shell to facilitate loading / running CIBERSORT software in structured environments☆26Updated 7 years ago
- ☆38Updated 5 years ago
- ☆20Updated 6 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- Processing scripts for single cell DNA sequencing on the Tapestri platform☆24Updated 2 years ago
- A robust and accurate cell type classifier for single cell RNA-seq data☆17Updated 2 years ago
- Repository containing all code for secondary analysis in the manuscript "On the design of CRISPR-based single cell molecular screens", Hi…☆26Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆21Updated 2 weeks ago
- Single Cell Analysis of Five'Ends☆50Updated last year