Integrative analysis of structural variations.
☆40Dec 20, 2023Updated 2 years ago
Alternatives and similar repositories for intansv
Users that are interested in intansv are comparing it to the libraries listed below
Sorting:
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Nov 4, 2021Updated 4 years ago
- CNV detection tool for targeted NGS panel data☆16Feb 28, 2022Updated 4 years ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Dec 31, 2025Updated 2 months ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆14Oct 10, 2022Updated 3 years ago
- v2.x of the microassembly based somatic variant caller☆23Jul 16, 2025Updated 7 months ago
- ☆20Nov 30, 2023Updated 2 years ago
- A Data Fusion Method for Multi Source (VCF4.0+) Structural Variation Analysis☆23Feb 4, 2025Updated last year
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45May 15, 2025Updated 9 months ago
- Population-wide Deletion Calling☆35Apr 16, 2025Updated 10 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- Efficient compression and retrieve of genotype data with integer sparse matrices☆16Apr 11, 2025Updated 10 months ago
- Whole Genome Annotation Pipeline☆16Jun 20, 2025Updated 8 months ago
- Integrated toolkit for analysis and evaluation of annotated genomes☆25Aug 1, 2025Updated 7 months ago
- Targeted and non-targeted anticancer drugs and drug regimens☆30Updated this week
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆27Jul 26, 2024Updated last year
- sort genomic data☆36Nov 7, 2025Updated 3 months ago
- Tools for processing and analyzing structural variants.☆157May 2, 2022Updated 3 years ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago
- Structural variant (SV) analysis tools☆40Jul 1, 2024Updated last year
- R package designed to simplify structural variant analysis☆74Dec 22, 2021Updated 4 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆11Updated this week
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Jun 6, 2024Updated last year
- a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads☆233Feb 17, 2022Updated 4 years ago
- lumpy: a general probabilistic framework for structural variant discovery☆338Feb 22, 2026Updated last week
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Jun 13, 2025Updated 8 months ago
- ☆11Sep 16, 2021Updated 4 years ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆106Jun 6, 2021Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Jul 1, 2024Updated last year
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated 8 months ago
- Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang☆31Apr 20, 2020Updated 5 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 2 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suite☆279May 21, 2025Updated 9 months ago
- Long Read Based SV Calling Tools Analysis☆14Mar 22, 2024Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆13Apr 9, 2022Updated 3 years ago
- Tao Yan's Plot Toolkit☆12Aug 20, 2019Updated 6 years ago
- ☆51Aug 27, 2019Updated 6 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Jun 2, 2020Updated 5 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago