YaoLab-Bioinfo / intansv
Integrative analysis of structural variations.
☆40Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for intansv
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Evolutionary Transcriptomics with R☆41Updated this week
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 3 weeks ago
- Pipeline for structural variation detection in cohorts☆48Updated 3 years ago
- ☆21Updated 2 weeks ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆53Updated 2 weeks ago
- ☆51Updated 5 years ago
- Adapters for trimming☆30Updated 5 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- ☆23Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated last month
- Exact Tandem Repeat Finder (not a TRF replacement)☆45Updated 5 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 2 months ago
- R-package: Calculation of haplotype blocks and libraries☆27Updated 8 months ago
- Genomic Association Tester☆29Updated last year
- Transposable element polymorphism identification☆32Updated 4 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆54Updated this week
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated last year
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆27Updated 3 years ago
- Splice junction analysis and filtering from BAM files☆38Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆25Updated 5 months ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated last year
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- ☆15Updated 2 years ago