YaoLab-Bioinfo / intansv
Integrative analysis of structural variations.
☆40Updated last year
Alternatives and similar repositories for intansv:
Users that are interested in intansv are comparing it to the libraries listed below
- Evolutionary Transcriptomics with R☆41Updated this week
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated last month
- Adapters for trimming☆30Updated 5 years ago
- Structural variant merging tool☆49Updated 4 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- ☆21Updated last month
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆21Updated 7 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- ☆51Updated 5 years ago
- Transposable element polymorphism identification☆32Updated 4 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- Genomic Association Tester☆30Updated last year
- Splice junction analysis and filtering from BAM files☆39Updated 2 years ago
- Structural variant (SV) analysis tools☆35Updated 6 months ago
- ☆23Updated 3 years ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆39Updated 4 months ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 5 years ago
- Population-wide Deletion Calling☆35Updated 4 months ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- Tools for processing and analyzing structural variants.☆32Updated 9 years ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- Transposon Insertion Finder - Detection of new TE insertions in NGS data☆20Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- Sashimi plots for RNA-seq data using detected transcripts☆27Updated last month
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆55Updated 2 months ago
- toolkit to process gtf files☆16Updated 3 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆27Updated 3 months ago