YaoLab-Bioinfo / intansvLinks
Integrative analysis of structural variations.
☆40Updated last year
Alternatives and similar repositories for intansv
Users that are interested in intansv are comparing it to the libraries listed below
Sorting:
- Evolutionary Transcriptomics with R☆43Updated 2 weeks ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 2 months ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- ☆51Updated 5 years ago
- DensityMap is perl tool for the visualization of features density along chromosomes☆17Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated last month
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- ☆22Updated 6 months ago
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆40Updated 3 weeks ago
- A simple script to create a customizable html file from an AnnotSV output.☆19Updated last year
- A comprehensive collection of long inverted repeats in 424 eukaryotic genomes☆16Updated 3 years ago
- Tools for processing and analyzing structural variants.☆33Updated 9 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Updated 6 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 9 months ago
- TEMP is a software package for detecting transposable elements (TEs) insertions and excisions from pooled high-throughput sequencing dat…☆22Updated 7 years ago
- A command line tool to compute mapping statistics from a BAM file☆24Updated 3 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆31Updated 2 years ago
- BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.☆27Updated 5 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Integrative analysis of complex structural variants☆21Updated 4 years ago
- Immuological gene typing and annotation for genome assembly☆37Updated 3 months ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago