broadinstitute / catch
A package for designing compact and comprehensive capture probe sets.
☆85Updated last year
Alternatives and similar repositories for catch
Users that are interested in catch are comparing it to the libraries listed below
Sorting:
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- a tool for inferring species tree from sequencing reads☆149Updated 3 months ago
- Development version of Easyfig☆93Updated last year
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated last year
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Updated 4 years ago
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 weeks ago
- Course material for the metagenomics course☆44Updated 3 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆133Updated last month
- Ultra-fast preprocessing and quality control for long-read sequencing data☆133Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆153Updated last year
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Download files from NCBI Entrez by accession☆123Updated 8 months ago
- Processing pipeline for pan-genome visulization and exploration☆138Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆119Updated last year
- Long-read mock community experiments☆105Updated 3 years ago
- Metatranscriptomics Tutorial☆62Updated last year
- a tool for designing primer panels for multiplex PCR.☆102Updated last year
- Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/☆80Updated 4 years ago
- Pipeline for metabolic annotation of microbial genomes☆146Updated last month
- ☆78Updated 4 years ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆111Updated last year
- snipit: summarise snps relative to your reference sequence☆158Updated this week
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆44Updated 9 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆92Updated 6 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆162Updated last year
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated 2 weeks ago
- ☆49Updated last year
- The ARTIC field bioinformatics pipeline☆122Updated last week