A package for designing compact and comprehensive capture probe sets.
☆105Jan 25, 2024Updated 2 years ago
Alternatives and similar repositories for catch
Users that are interested in catch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline for universal design of target-enrichment probes from various sources of genomic data.☆29Oct 18, 2020Updated 6 years ago
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 6 months ago
- Visualize microbial evolution at the SNP level!☆18Aug 12, 2025Updated last year
- Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targets☆18Sep 19, 2023Updated 3 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Feb 14, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 2 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆58Mar 23, 2026Updated 7 months ago
- Primalscheme3. Generation of highly multiplex primerschemes☆28Oct 20, 2026Updated 2 weeks ago
- Ultra-rapid detection of viral variants directly from sequencing data☆49Sep 16, 2026Updated last month
- Build phylogenomic datasets in seconds☆15Oct 28, 2026Updated last week
- ☆11Nov 24, 2025Updated 11 months ago
- Ultrafast identification of signature sequences in microbial genomes☆26Updated this week
- a tool for designing primer panels for multiplex PCR.☆113Feb 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆27Feb 23, 2026Updated 8 months ago
- Lineage-aware Kraken2 refinement for long-read metagenomics☆17Oct 2, 2026Updated last month
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆29Jun 4, 2024Updated 2 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆66Nov 7, 2023Updated 2 years ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆109Oct 27, 2026Updated last week
- Automatically design multiplex PCR primer pairs for diverse templates☆37May 23, 2024Updated 2 years ago
- Quickly generate consensus assemblies for bacterial genomes☆14Sep 12, 2025Updated last year
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Distance-based Phylogenetic Placer☆25Sep 8, 2026Updated last month
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 5 months ago
- A high-performance in-silico PCR tool for primer matching and product extraction from FASTA and GenBank sequences.☆20Feb 25, 2026Updated 8 months ago
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated 3 months ago
- Python3 module for running MUMmer and reading the output☆33Mar 24, 2025Updated last year
- ☆18Jul 27, 2023Updated 3 years ago
- Split k-mer analysis – version 2☆109Oct 20, 2026Updated 2 weeks ago
- ☆84Sep 13, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆68Oct 23, 2026Updated last week
- Depth-weighted De-Mixing☆134Updated this week
- A python package for qPCR primers design, check, annotate and visualize.☆11Jan 6, 2025Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆71Apr 10, 2025Updated last year
- ☆10Jun 9, 2020Updated 6 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆159Sep 2, 2026Updated 2 months ago