A package for designing compact and comprehensive capture probe sets.
☆104Jan 25, 2024Updated 2 years ago
Alternatives and similar repositories for catch
Users that are interested in catch are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Hierarchical Unique Bait Design for simultaneous and specific capture of known and novel targets☆18Sep 19, 2023Updated 3 years ago
- Pipeline for universal design of target-enrichment probes from various sources of genomic data.☆29Oct 18, 2020Updated 5 years ago
- Visualize microbial evolution at the SNP level!☆17Aug 12, 2025Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆42Apr 6, 2026Updated 5 months ago
- software to identify primers that can distinguish genomes☆20Aug 31, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Bacterial genomes finishing tool for structural insights on draft genomes☆23Sep 22, 2023Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- A package for designing activity-informed nucleic acid diagnostics for viruses.☆34Feb 14, 2023Updated 3 years ago
- a tool for designing primer panels for multiplex PCR.☆111Feb 5, 2024Updated 2 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- MetScale: snakemake workflows to scale metagenome analyses☆19May 15, 2025Updated last year
- ☆11Nov 24, 2025Updated 10 months ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆56Mar 23, 2026Updated 6 months ago
- A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants☆48May 21, 2017Updated 9 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆85Sep 13, 2023Updated 3 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆27Feb 23, 2026Updated 7 months ago
- Scripts used for the ACT paper☆12May 6, 2021Updated 5 years ago
- Code for design of diagnostic PCR primers, and metabarcoding markers.☆66Nov 7, 2023Updated 2 years ago
- ☆18Jul 27, 2023Updated 3 years ago
- ☆12Jan 29, 2020Updated 6 years ago
- MethyScan: A tool for methylation specific PCR primer design and evaluation☆16Aug 20, 2021Updated 5 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- Recombination-free trees☆73Jul 24, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis☆17Feb 19, 2026Updated 7 months ago
- Microbial agile accurate SNP Typer☆30Dec 27, 2023Updated 2 years ago
- Ultra-rapid detection of viral variants directly from sequencing data☆47Sep 16, 2026Updated last week
- ☆17May 22, 2023Updated 3 years ago
- Genomic neighbor typing of bacterial pathogens using MinHash☆42Jan 10, 2023Updated 3 years ago
- iFISH Probe Design: a Python3 package to build iFISH probes.☆12Mar 11, 2022Updated 4 years ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆477Updated this week
- FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomi…☆68Jun 4, 2026Updated 3 months ago
- Minimum Bait Cover Toolkit Syotti.☆15Jan 22, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Primalscheme3. Generation of highly multiplex primerschemes☆27Dec 4, 2025Updated 9 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆253Jan 18, 2024Updated 2 years ago
- ClusterScan, search for clusters of features in a given annotation.☆10Aug 26, 2021Updated 5 years ago
- de.NBI Nanopore Training Course☆21Jun 13, 2025Updated last year
- Strain-level haplotyping for metagenomes with short or long-reads.☆72Apr 10, 2025Updated last year
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 4 months ago