An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data
β19Apr 18, 2022Updated 4 years ago
Alternatives and similar repositories for compPLS
Users that are interested in compPLS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Functions to analyse compositional data and produce confidence intervals for relative increases and decreases in the compositional componβ¦β14Jan 31, 2023Updated 3 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-β¦β40Apr 7, 2026Updated 3 months ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamicsβ20Dec 9, 2022Updated 3 years ago
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."β21Dec 30, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- tree-aggregated compositional analysis for high-throughput sequencing dataβ11Aug 24, 2022Updated 3 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)β22Mar 12, 2026Updated 4 months ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022β41Jan 30, 2024Updated 2 years ago
- Functions for distance matrix objects in R.β15Mar 9, 2026Updated 4 months ago
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β54Jun 14, 2025Updated last year
- Supercharged pandas indexingβ11Mar 28, 2021Updated 5 years ago
- Antimicrobial Resistance Analysisβ10Jun 11, 2024Updated 2 years ago
- Do microbiome analysis with dada2 and phyloseq objectβ15Oct 9, 2024Updated last year
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshiftβ19Sep 30, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Interactive, web tool for exploring pan-genome of bacterial strainsβ50Jan 14, 2026Updated 6 months ago
- babette is an R package to work with BEAST2β46Updated this week
- Graph convolutional neural network for host predictionβ18Jul 13, 2025Updated last year
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizβ¦β30May 11, 2026Updated 2 months ago
- MetScale: snakemake workflows to scale metagenome analysesβ19May 15, 2025Updated last year
- compositional data analysis toolboxβ61Dec 15, 2022Updated 3 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embeddingβ14Oct 17, 2023Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and hostβ¦β26Jun 3, 2026Updated last month
- CCLasso: Correlation Inference for Compositional Data through Lassoβ18Jan 8, 2016Updated 10 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits β’ AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Code for de novo discovery of viral families in virome dataβ16Jun 20, 2024Updated 2 years ago
- atlantistoolsβ10May 21, 2026Updated 2 months ago
- Various scripts for efficient processing of 10k Salmonella genomesβ16Sep 16, 2021Updated 4 years ago
- β13Jun 6, 2024Updated 2 years ago
- A manually curated database of human gut metabolic modules.β19Jul 27, 2018Updated 7 years ago
- Primalscheme3. Generation of highly multiplex primerschemesβ25Dec 4, 2025Updated 7 months ago
- Set of utilities on sequences and BAM filesβ27Oct 27, 2021Updated 4 years ago
- http://huttenhower.sph.harvard.edu/waafleβ24Jun 16, 2026Updated last month
- Ying's tools for analysis, with particular focus on microbiome dataβ40Jul 6, 2026Updated 2 weeks ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- DeepECtransformerβ32Oct 20, 2023Updated 2 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signaturesβ30Updated this week
- Bioinformatic Tools for study Evolution of metabolic diversityβ41Feb 27, 2024Updated 2 years ago
- Convert statistical analysis objects from R into tidy formatβ24Feb 4, 2023Updated 3 years ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)β27Apr 22, 2020Updated 6 years ago
- Compute strain abundance in a defined microbial communityβ10Jul 27, 2023Updated 2 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)β37Dec 7, 2021Updated 4 years ago