An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data
β19Apr 18, 2022Updated 4 years ago
Alternatives and similar repositories for compPLS
Users that are interested in compPLS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated last year
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-β¦β43Updated this week
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."β21Dec 30, 2019Updated 6 years ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamicsβ20Dec 9, 2022Updated 3 years ago
- Python3 wrapper for parallelized gene prediction using Prodigalβ11Mar 3, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- tree-aggregated compositional analysis for high-throughput sequencing dataβ12Aug 24, 2022Updated 4 years ago
- Functions for distance matrix objects in R.β15Mar 9, 2026Updated 7 months ago
- compositional data analysis toolboxβ63Dec 15, 2022Updated 3 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)β22Mar 12, 2026Updated 7 months ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022β42Jan 30, 2024Updated 2 years ago
- β10Jul 6, 2024Updated 2 years ago
- An R package for learning log-ratio biomarkers from high-throughput sequencing data.β23Mar 31, 2023Updated 3 years ago
- Antimicrobial Resistance Analysisβ10Jun 11, 2024Updated 2 years ago
- Pipelines for eukaryotic pangenome analysis from McCarthy & Fitzpatrick (2019).β12Jun 7, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean β’ AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β54Jun 14, 2025Updated last year
- Profile RNA-seq data using published TB gene signaturesβ13Dec 15, 2025Updated 10 months ago
- Graph convolutional neural network for host predictionβ18Jul 13, 2025Updated last year
- β16Jun 18, 2020Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strainsβ50Jan 14, 2026Updated 9 months ago
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizβ¦β30May 11, 2026Updated 5 months ago
- alignment-free coverage calculation for metagenomic binning >100 times fasterβ58May 8, 2026Updated 5 months ago
- Do microbiome analysis with dada2 and phyloseq objectβ17Oct 9, 2024Updated 2 years ago
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshiftβ19Sep 30, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- R package for annotating metagenomic datasets with taxonomic informationβ10Feb 11, 2020Updated 6 years ago
- CCLasso: Correlation Inference for Compositional Data through Lassoβ17Jan 8, 2016Updated 10 years ago
- babette is an R package to work with BEAST2β46Jul 16, 2026Updated 3 months ago
- R package providing a tidy grammar of population genetics, facilitating the manipulation and analysis of large datasets of biallelic singβ¦β17Updated this week
- Code for de novo discovery of viral families in virome dataβ16Jun 20, 2024Updated 2 years ago
- MetScale: snakemake workflows to scale metagenome analysesβ19May 15, 2025Updated last year
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embeddingβ14Oct 17, 2023Updated 3 years ago
- β13Jun 6, 2024Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and hostβ¦β27Aug 20, 2026Updated 2 months ago
- GPU virtual machines on DigitalOcean Gradient AI β’ AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Ying's tools for analysis, with particular focus on microbiome dataβ40Jul 6, 2026Updated 3 months ago
- Various scripts for efficient processing of 10k Salmonella genomesβ16Sep 16, 2021Updated 5 years ago
- Set of utilities on sequences and BAM filesβ28Oct 27, 2021Updated 5 years ago
- CroCoDeEL detects cross-sample contamination in shotgun metagenomic dataβ32Sep 8, 2026Updated last month
- Primalscheme3. Generation of highly multiplex primerschemesβ28Oct 20, 2026Updated last week
- A manually curated database of human gut metabolic modules.β19Jul 27, 2018Updated 8 years ago
- JupyterBook for QIIME 2 FAES January 2022 workshopβ12Mar 19, 2025Updated last year