zdk123 / compPLSLinks
An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data
☆20Updated 3 years ago
Alternatives and similar repositories for compPLS
Users that are interested in compPLS are comparing it to the libraries listed below
Sorting:
- ☆27Updated last year
- 'alto' is an R package that aligns topics from different LDA models, computes metrics for quantifying the goodness of alignment, and prov…☆16Updated last year
- ALDEx_bioc is the working directory for updating bioconductor☆28Updated 3 months ago
- Do microbiome analysis with dada2 and phyloseq object☆14Updated 10 months ago
- Ying's tools for analysis, with particular focus on microbiome data☆41Updated 2 weeks ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and host…☆22Updated last year
- Materials for the STAMPS 2022 course at the MBL in Woods Hole, MA, USA☆22Updated 3 years ago
- ☆12Updated 7 years ago
- Zero-Inflated Beta Random Effect model☆31Updated last year
- R package for microbiome analysis. Provides helper functions for common workflows ranging from preprocessing to visualization.☆23Updated last year
- phylogenetic analyses informed by deep mutational scanning data☆15Updated last year
- Calculate the normalizing factors for zeroinflated sequencing data such as microbiome sequencing data☆16Updated 7 months ago
- Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)☆19Updated 4 years ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- tidyMicro GitHup Repository☆19Updated 3 years ago
- ☆15Updated 9 months ago
- K-mer Counting for Biological Sequence Analysis☆27Updated 6 years ago
- Linear Decomposition Model☆24Updated 2 years ago
- METAgenomic LONgitudinal Differential Abundance method☆16Updated 5 years ago
- ☆14Updated 3 years ago
- A comprehensive and customizable R package for microbiome analysis.☆23Updated 3 weeks ago
- Site that contains musings and code for compositional analysis of high throughput sequencing experiments☆16Updated last year
- A manually curated database of human gut metabolic modules.☆18Updated 7 years ago
- Robust Aitchison PCA from sparse count data☆36Updated 3 years ago
- Schloss Lab Tools for Reproducible Microbiome Research 💩☆31Updated 2 years ago
- Methods used in the article "Assessment of statistical methods from single cell, bulk RNA-seq and metagenomics applied to microbiome data…☆10Updated 5 years ago
- Scripts used in the publication Tyler P. Barnum, Israel A. Figueroa, Charlotte I. Carlström, Lauren N. Lucas, Anna L. Engelbrektson, and …☆10Updated 6 years ago
- Differential analysis of multi-omics data based on the Tweedie distribution☆28Updated last year
- ☆27Updated 2 years ago
- An R package for displaying binary trees, aiming to represent multiple layers of information on dendrogram leaves.☆13Updated 3 years ago