An R package for Partial Least Squares analysis and plotting for (high dimensional) compositional data
β20Apr 18, 2022Updated 3 years ago
Alternatives and similar repositories for compPLS
Users that are interested in compPLS are comparing it to the libraries listed below
Sorting:
- Dadaist2 π¨ Highway to Rβ13Mar 7, 2025Updated 11 months ago
- The seqtime R package provides functions to analyse sequencing data time series and to simulate community dynamicsβ21Dec 9, 2022Updated 3 years ago
- Analysis code used in Galeano Nino et al., Impact of Intratumoral Microbiota on Spatial and Cellular Heterogeneity in human cancer. 2022β39Jan 30, 2024Updated 2 years ago
- Functions to analyse compositional data and produce confidence intervals for relative increases and decreases in the compositional componβ¦β14Jan 31, 2023Updated 3 years ago
- tree-aggregated compositional analysis for high-throughput sequencing dataβ10Aug 24, 2022Updated 3 years ago
- Antimicrobial Resistance Analysisβ10Jun 11, 2024Updated last year
- Functions for distance matrix objects in R.β14Updated this week
- Code for de novo discovery of viral families in virome dataβ16Jun 20, 2024Updated last year
- Do microbiome analysis with dada2 and phyloseq objectβ14Oct 9, 2024Updated last year
- β13Jun 6, 2024Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.β55Jun 14, 2025Updated 8 months ago
- Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."β21Dec 30, 2019Updated 6 years ago
- Various scripts for efficient processing of 10k Salmonella genomesβ16Sep 16, 2021Updated 4 years ago
- Predicting mechanism of action of novelcompounds using compound structure andtranscriptomic signature co-embeddingβ14Oct 17, 2023Updated 2 years ago
- Handy tools for Microbiome analysis in Rβ18May 22, 2019Updated 6 years ago
- MetScale: snakemake workflows to scale metagenome analysesβ19May 15, 2025Updated 9 months ago
- A manually curated database of human gut metabolic modules.β17Jul 27, 2018Updated 7 years ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorialβ11Jul 25, 2025Updated 7 months ago
- babette is an R package to work with BEAST2β46Dec 20, 2025Updated 2 months ago
- http://huttenhower.sph.harvard.edu/waafleβ23Feb 20, 2026Updated last week
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshiftβ19Sep 30, 2024Updated last year
- CCLasso: Correlation Inference for Compositional Data through Lassoβ16Jan 8, 2016Updated 10 years ago
- Bioinformatic Tools for study Evolution of metabolic diversityβ39Feb 27, 2024Updated 2 years ago
- Graph convolutional neural network for host predictionβ18Jul 13, 2025Updated 7 months ago
- β23Jul 9, 2025Updated 7 months ago
- Primalscheme3. Generation of highly multiplex primerschemesβ22Dec 4, 2025Updated 2 months ago
- β18Dec 7, 2020Updated 5 years ago
- Single-Cell Analysis of Immune Cells from Renal Clear Cell Carcinomaβ21Aug 15, 2021Updated 4 years ago
- An R-based approach for preprocessing and aligning 16S, metagenomic, and metatranscriptomic data (PathoScope version 3.0)β22Jan 23, 2026Updated last month
- Interactive, web tool for exploring pan-genome of bacterial strainsβ49Jan 14, 2026Updated last month
- R package for Statistical Inference of Associations between Microbial Communities And host phenoTypeβ58Jan 30, 2024Updated 2 years ago
- Pangenome analysis of eukaryotes.β21Sep 21, 2020Updated 5 years ago
- NRPSpredictor2 is a program to predict the specificity of bacterial and fungal adenylation domains.β11Oct 7, 2019Updated 6 years ago
- Python package for compositional data analysis including CLR/ILR, proportionality, partial correlation with basis shrinkage, and visualizβ¦β27Aug 28, 2023Updated 2 years ago
- tidyMicro GitHup Repositoryβ21Nov 17, 2021Updated 4 years ago
- A tutorial for Metagenome-Atlasβ23Nov 24, 2023Updated 2 years ago
- Annotation of Metabolite Origin via Networks: A tool for predicting putative metabolite origins for microbes or between microbes and hostβ¦β25Jan 15, 2026Updated last month
- A comprehensive and customizable R package for microbiome analysis.β23Aug 10, 2025Updated 6 months ago
- Open prediction of Polysaccharide Utilisation Loci (PUL)β24Apr 22, 2020Updated 5 years ago