shorvath / MammalianMethylationConsortiumLinks
DNA methylation studies of mammalian species
☆35Updated 8 months ago
Alternatives and similar repositories for MammalianMethylationConsortium
Users that are interested in MammalianMethylationConsortium are comparing it to the libraries listed below
Sorting:
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- Time-Course Multi-Omics data integration☆25Updated last year
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆39Updated 3 years ago
- A list of alternative splicing analysis resources☆44Updated 3 months ago
- A continually expanding collection of RNA-seq tools☆51Updated 9 months ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- ☆74Updated 3 months ago
- MutSig2CV from Lawrence et al. 2014☆31Updated 4 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆38Updated 5 years ago
- ☆44Updated 2 years ago
- A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to …☆23Updated 3 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated last month
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆78Updated 3 years ago
- A Perl/R pipeline for plotting metagenes☆37Updated 3 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆75Updated last month
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- A method for circular DNA detection based on probabilistic mapping of ultrashort reads☆64Updated last year
- Homologous recombination deficiency in TCGA PanCancer Atlas☆27Updated 4 years ago
- direct comparison of circular and linear RNA expression☆23Updated 4 years ago
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- ☆58Updated 4 years ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- RNA editing quantification in deep transcriptome data☆15Updated 2 years ago