Published methods
☆15Oct 19, 2016Updated 10 years ago
Alternatives and similar repositories for dna-secondary-struct-chrom-lands
Users that are interested in dna-secondary-struct-chrom-lands are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Data Analysis For FLAM-Seq Third Generation RNA Sequencing☆10Jan 22, 2022Updated 4 years ago
- The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans☆11Aug 24, 2017Updated 9 years ago
- Code and files accompanying article "The landscape of somatic mutation in normal colorectal epithelial cells"☆11Mar 21, 2021Updated 5 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆18Nov 26, 2019Updated 6 years ago
- Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by…☆20Oct 5, 2017Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆62Jul 20, 2020Updated 6 years ago
- A python library for decomposing and visualizing tandem repeat sequences☆11May 26, 2026Updated 5 months ago
- hiHMM: Bayesian non-parametric joint inference of chromatin state maps☆10Jan 28, 2015Updated 11 years ago
- Tools for visualizing genomics data☆73Oct 26, 2021Updated 5 years ago
- Scripts used in the analysis of C elegans dRNAseq data☆14Apr 7, 2024Updated 2 years ago
- ☆25Jun 27, 2023Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆16Nov 29, 2018Updated 7 years ago
- Awesome CV in R. Based on the vitae package and Dominique Makowski’s template.☆11Oct 23, 2026Updated 2 weeks ago
- Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.☆12Sep 12, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ATAC-seq and DNase-seq processing pipeline☆166Jun 21, 2022Updated 4 years ago
- R package for reading in & working with NucleoATAC outputs☆27Oct 13, 2018Updated 8 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Nov 21, 2018Updated 7 years ago
- R package for high-throughput DNA shape predictions and feature encoding☆20Jul 1, 2021Updated 5 years ago
- Workflow for analyzing MNase-seq data to generate nucleosome occupancy plots☆12Dec 1, 2022Updated 3 years ago
- splicing and feature maps for RBPs☆25Oct 4, 2026Updated last month
- The analysis pipeline for FLEP-seq☆19Aug 18, 2023Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Jul 6, 2021Updated 5 years ago
- A chronological age predictor based on DNA methylation☆22Mar 14, 2024Updated 2 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Jan 5, 2022Updated 4 years ago
- BioSQL web☆14Jun 22, 2009Updated 17 years ago
- Scripts to perform analysis in Agreement between two large pan-cancer CRISPR-Cas9 gene dependency datasets☆13Dec 5, 2019Updated 6 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- Read DNA sequences from colourful Microsoft Word documents☆34May 12, 2025Updated last year
- Dynamic Analysis of Alternative Polyadenylation from single-cell RNA-seq (scDaPars)☆19May 25, 2021Updated 5 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Mar 12, 2020Updated 6 years ago
- Deep learning for identifying cis-regulatory elements and other applications☆34Nov 21, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ENCODE Uniform processing pipeline for ChIP-seq☆125Mar 23, 2020Updated 6 years ago
- PARE: a computational method to Predict Active Regulatory Elements☆11Aug 8, 2025Updated last year
- Knowledge Independent Network Construction☆12Dec 23, 2025Updated 10 months ago
- Fast motif matching in R☆50Jan 24, 2024Updated 2 years ago
- Repository for "Multilayered VBC-score predicts sgRNAs that efficiently generate loss-of-function alleles" Michlits et al. Nature Methods…☆12Apr 10, 2020Updated 6 years ago
- ☆21Mar 20, 2017Updated 9 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Aug 25, 2020Updated 6 years ago