sblab-bioinformatics / dna-secondary-struct-chrom-landsLinks
Published methods
☆15Updated 8 years ago
Alternatives and similar repositories for dna-secondary-struct-chrom-lands
Users that are interested in dna-secondary-struct-chrom-lands are comparing it to the libraries listed below
Sorting:
- A set of pipelines for Hi-C and ChIP-Seq analysis.☆47Updated last year
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- chia pet analysis software☆25Updated 6 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- snakemake workflow for post-processing scATACseq data☆22Updated 5 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- A modular, containerized pipeline for ATAC-seq data processing☆58Updated 3 months ago
- tools to find circRNAs in RNA-seq data☆44Updated 7 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆40Updated 3 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- DCC/DAC methylation pipeline source☆56Updated 5 years ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆67Updated 5 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- A preprocessing and QC pipeline for HiChIP data☆40Updated 3 years ago
- ☆38Updated 4 years ago
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆20Updated 2 years ago
- A toolkit for QC and visualization of ATAC-seq results.☆71Updated 7 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- Software to compute reproducibility and quality scores for Hi-C data☆50Updated 6 years ago
- Differential analysis for ChIP-seq with biological replicates☆35Updated 3 years ago
- code associated with crane-nature-2015, 10.1038/nature14450☆36Updated 9 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Tutorial Website☆59Updated 4 years ago
- ☆18Updated 6 years ago
- Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs☆50Updated last month
- ☆17Updated 6 years ago