Alternatives and similar repositories for scAge

Users that are interested in scAge are comparing it to the libraries listed below

• ncborcherding / utility
  Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR
  ☆93Updated last month
• BorchLab / Trex
  Using TCR and expression for sequence embedding
  ☆60Updated 3 months ago
• czbiohub-sf / tabula-sapiens
  Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens
  ☆42Updated 2 months ago
• calico / solo
  software to detect doublets
  ☆95Updated 10 months ago
• saezlab / progeny
  R package for Pathway RespOnsive GENe activity inference
  ☆110Updated 2 years ago
• phbradley / conga
  Clonotype Neighbor Graph Analysis
  ☆92Updated 2 months ago
• YosefLab / popV
  ☆83Updated last week
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 3 years ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆95Updated 10 months ago
• SchubertLab / mvTCR
  ☆55Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆131Updated 3 months ago
• zktuong / dandelion
  dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data
  ☆121Updated this week
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆50Updated 6 months ago
• Novartis / scar
  scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics
  ☆56Updated last year
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆153Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆90Updated 5 months ago
• ggjlab / HCL
  Tools used in Human Cell Landscape(HCL)
  ☆56Updated 5 years ago
• yelabucsf / scrna-parameter-estimation
  Direct estimation of mean and covariance from single cell RNA seq experiments
  ☆122Updated 6 months ago
• s175573 / GIANA
  Ultrafast TCR clustering algorithm based on geometric isometry
  ☆69Updated last year
• aertslab / create_cisTarget_databases
  Create cisTarget databases
  ☆54Updated 5 months ago
• HetzDra / turboGliph
  R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…
  ☆25Updated 3 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆38Updated 2 years ago
• immunogenomics / symphony
  Efficient and precise single-cell reference atlas mapping with Symphony
  ☆112Updated 2 weeks ago
• alexyermanos / Platypus
  R package for the analysis of single-cell immune repertoires
  ☆43Updated 9 months ago
• Teichlab / cellhint
  A tool for semi-automatic cell type harmonization and integration
  ☆115Updated 2 weeks ago
• brianhie / geosketch
  Geometry-preserving random sampling
  ☆93Updated last year
• SCCAF / sccaf
  Single-Cell Clustering Assessment Framework
  ☆106Updated 2 years ago
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆67Updated 2 weeks ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆81Updated 7 months ago
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆105Updated last year