alex-trapp / scAgeLinks
Profiling epigenetic age in single cells
☆38Updated 3 years ago
Alternatives and similar repositories for scAge
Users that are interested in scAge are comparing it to the libraries listed below
Sorting:
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆42Updated this week
- Single cell omics biology annotations☆51Updated 3 months ago
- Clonotype Neighbor Graph Analysis☆90Updated this week
- ☆53Updated 9 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆114Updated 3 months ago
- Analysis of cell-cell communication at single-cell resolution☆103Updated 11 months ago
- software to detect doublets☆92Updated 7 months ago
- ☆81Updated last week
- Context specific and dynamic gene regulatory network reconstruction and analysis☆121Updated last month
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆70Updated 2 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 4 months ago
- Tools used in Human Cell Landscape(HCL)☆56Updated 5 years ago
- ☆55Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 5 months ago
- Multi-omic velocity inference☆110Updated 9 months ago
- Create cisTarget databases☆52Updated last month
- This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.☆32Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆117Updated this week
- Using TCR and expression for sequence embedding☆57Updated 6 months ago
- Python implementation of the Slingshot pseudotime algorithm☆61Updated last year
- A method to rapidly assess cell type identity using both functional and random gene sets☆39Updated 7 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆63Updated last month
- R package for Pathway RespOnsive GENe activity inference☆107Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆91Updated last year
- Gene group activity utility functions for Scanpy☆83Updated 7 months ago
- Single-Cell Clustering Assessment Framework☆105Updated last year
- SenePy is a set of tools to score single-cells based on their expression of cell-specific senescence markers. Please see the following pu…☆43Updated 6 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 3 months ago
- Functional Inference of Gene Regulation☆46Updated last year