dgidb / dgidb-v5

Related projects ⓘ

Alternatives and complementary repositories for dgidb-v5

• chembl / tractability_pipeline_v2
  Pipeline for assessing the tractability of potential targets (starting from Gene IDs)
  ☆20Updated 3 months ago
• hgbrian / biocolabs
  a collection of colabs useful for molecular biology
  ☆27Updated 8 months ago
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆28Updated 7 months ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 2 months ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆42Updated last month
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆21Updated 3 months ago
• kusterlab / curve_curator
  Analysis platform for large-scale dose-dependent data
  ☆19Updated last week
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆48Updated 3 months ago
• JonnyTran / OpenOmics
  A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
  ☆31Updated 4 months ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆62Updated last year
• crazyhottommy / Machine_learning_drug_discovery
  ☆22Updated this week
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆23Updated 7 months ago
• ViennaRNA / RNAsketch
  Python wrapper to design RNA molecules using RNAblueprint, RNARedPrint and for energy evaluations ViennaRNA, Hotknots, pKiss and Nupack.
  ☆18Updated 6 years ago
• altayg / Deep-Learning-MHCI
  For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
  ☆12Updated 6 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆34Updated 2 years ago
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆10Updated 6 months ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆18Updated last year
• varnivey / ipanda
  insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…
  ☆25Updated 7 years ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆13Updated 2 years ago
• wikipathways / pywikipathways
  Python Client Package for WikiPathways
  ☆15Updated 3 weeks ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆28Updated 5 months ago
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆21Updated 3 weeks ago
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated this week
• epigen / KPNN
  Knowledge-primed neural networks
  ☆34Updated last year
• TattaBio / DGEB
  Diverse Genomic Embedding Benchmark
  ☆37Updated last month
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆60Updated 2 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆16Updated 5 months ago
• chenhcs / DIFFUSE
  Deep learning based prediction of IsoForm FUnctions from Sequences and Expression
  ☆15Updated 3 years ago
• dvklopfenstein / ReactomePy
  Explore biomolecular pathways in Reactome from the command-line or a Python script
  ☆22Updated last month
• evanseitz / squid-nn
  surrogate quantitative interpretability for deepnets
  ☆17Updated 4 months ago