vitkl / ParetoTILinks
R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)
☆32Updated 5 years ago
Alternatives and similar repositories for ParetoTI
Users that are interested in ParetoTI are comparing it to the libraries listed below
Sorting:
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆87Updated 2 months ago
- Clone identification from single-cell data☆61Updated 3 years ago
- ☆48Updated 7 years ago
- ☆29Updated 2 years ago
- Updated scripts and pipelines for processing GESTALT data at single-cell resolution☆20Updated 4 years ago
- ☆43Updated 5 years ago
- ConsensusTME Gene Sets and R Script☆39Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆46Updated 3 years ago
- scNMT-seq gastrulation☆42Updated 3 years ago
- ☆56Updated 5 years ago
- Capybara: A computational tool to measure cell identity and fate transitions☆60Updated 3 years ago
- BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequenc…☆31Updated 8 months ago
- R package for analysing single cell data☆59Updated 3 years ago
- ☆47Updated 5 years ago
- ☆59Updated last year
- scAR (single-cell Ambient Remover) is a deep learning model for removal of the ambient signals in droplet-based single cell omics☆57Updated last year
- A machine learning method for the discovery of the minimum marker gene combinations for cell type identification from single-cell RNA seq…☆66Updated 5 months ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆41Updated 4 years ago
- An r package that works as a wrapper to homologene☆49Updated 2 years ago
- Single-cell Case Control Analysis☆52Updated 2 weeks ago
- .h5mu files interface for Seurat☆32Updated 2 years ago
- ☆33Updated last year
- Multi-sample Unified Discriminant ANalysis☆75Updated 2 years ago
- R package for specialised analysis of single cell data☆40Updated 3 years ago
- FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis☆23Updated last year
- ☆34Updated 6 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆58Updated 4 years ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 6 years ago
- Filtering of Poison noise on a single-cell RNA-seq UMI count matrix☆79Updated 2 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago