R toolbox for Archetypal Analysis and Pareto Task Inference on single cell data (based on ParTI)
☆32Jul 27, 2020Updated 6 years ago
Alternatives and similar repositories for ParetoTI
Users that are interested in ParetoTI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Source code and data supporting "Evaluating measures of association for single-cell transcriptomics"☆17Feb 25, 2019Updated 7 years ago
- Python package that implements the PCHA algorithm for Archetypal Analysis by Mørup et. al.☆46Aug 28, 2025Updated last year
- Single-cell archetypal analysis neural network☆15May 27, 2022Updated 4 years ago
- ☆12May 14, 2024Updated 2 years ago
- Scikit-learn compatible package for archetypal analysis.☆29Jun 16, 2026Updated 3 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆10Sep 26, 2019Updated 7 years ago
- Reconstruction of spatial context of gene expression with optimal transport☆11Mar 14, 2019Updated 7 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- A collection of resources and knowledge for analysis of scATAC+scRNA multi omics data☆10Sep 16, 2022Updated 4 years ago
- Code and results from TotalSeqC antibody titration and pipeline benchmarking for CITE-seq experiments☆10Mar 13, 2021Updated 5 years ago
- Archetypal Analysis network (AAnet)☆41Jan 30, 2025Updated last year
- Pathway-Regularized Matrix Factorization☆12Apr 6, 2020Updated 6 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆20Feb 9, 2022Updated 4 years ago
- TFregulomeR reveals transcription factors’ context-specific features and functions☆15Apr 18, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Isoform-level expression patterns in single-cell RNA-sequencing data☆12Apr 20, 2023Updated 3 years ago
- Regulatory network inference and driver gene evaluation using integrative multi-omics analysis and penalized regression☆18Jan 26, 2026Updated 8 months ago
- A Matlab package to perform Pareto Task Inference (ParTI), which infers tasks from high-dimensional datasets.☆15Jan 21, 2020Updated 6 years ago
- Snakemake with pytest example☆11Jul 18, 2020Updated 6 years ago
- ☆22Feb 28, 2025Updated last year
- Code for "Feature selection methods affect the performance of scRNA-seq data integration and querying"☆33Mar 15, 2025Updated last year
- Inferring, interpreting and visualising trajectories using a streamlined set of packages 🦕☆186Jun 24, 2021Updated 5 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 9 years ago
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆36Jan 4, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Transposable element databases☆18Apr 7, 2022Updated 4 years ago
- ☆66Sep 15, 2020Updated 6 years ago
- Exon-Intron Split Analysis (EISA) in R☆18Aug 27, 2026Updated 3 weeks ago
- Diverse sampling for single-cell datasets☆17Mar 22, 2026Updated 6 months ago
- This repository consists of scripts and workflows used for generating results, figures, and tables published in the article: Can Liu, And…☆15Feb 17, 2021Updated 5 years ago
- Scripts for using scanpy☆40Oct 20, 2025Updated 11 months ago
- Geometry-preserving random sampling☆98Oct 29, 2024Updated last year
- mcRigor: a statistical method to enhance the rigor of metacell partitioning in single-cell data analysis☆17Apr 8, 2026Updated 5 months ago
- In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes☆126Oct 31, 2025Updated 10 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome.☆15May 4, 2016Updated 10 years ago
- ☆30Feb 1, 2023Updated 3 years ago
- ☆14Feb 24, 2020Updated 6 years ago
- Supervised Adversarial Alignment of Single-Cell RNA-seq Data☆32Feb 6, 2020Updated 6 years ago
- FulQuant pipeline to identify and quantify transcript isoforms based on Nanopore long-read data☆10Jul 20, 2022Updated 4 years ago
- ☆22Mar 2, 2026Updated 6 months ago
- Cellular Genetics Informatics Notebooks☆24Nov 7, 2025Updated 10 months ago