Alternatives and similar repositories for HarmonizomePythonScripts

Users that are interested in HarmonizomePythonScripts are comparing it to the libraries listed below

• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆46Updated 4 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆46Updated last year
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆23Updated 2 months ago
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆51Updated last month
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆46Updated 3 years ago
• snap-stanford / KGWAS
  KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph
  ☆74Updated 7 months ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆36Updated 5 years ago
• mims-harvard / COMPASS
  Generalizable AI predicts immunotherapy outcomes across cancers and treatments
  ☆39Updated this week
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• TeoSakel / deep-drug-response
  ☆19Updated 5 years ago
• zuozhaorui / SWnet
  Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…
  ☆20Updated 4 years ago
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆71Updated 2 years ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆29Updated 10 months ago
• PayneLab / cptac
  Python packaging for CPTAC data
  ☆96Updated last year
• scverse / muon-tutorials
  Tutorials for multimodal omics data analysis
  ☆17Updated 7 months ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆62Updated last year
• kenichi-shimada / shinyDepMap
  A shiny-based web tool for interactive analysis of DepMap data
  ☆23Updated 4 years ago
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated 2 years ago
• hamiltonoh / organage
  A package to estimate biological organ age using SomaScan plasma proteomics data
  ☆59Updated last year
• crazyhottommy / Machine_learning_drug_discovery
  ☆27Updated 6 months ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• idekerlab / llm_evaluation_for_gene_set_interpretation
  Code space for 'Evaluation of large language models for discovery of gene set function'
  ☆39Updated 9 months ago
• OSU-BMBL / scDEAL
  Deep Transfer Learning of Drug Sensitivity by Integrating Bulk and Single-cell RNA-seq data
  ☆56Updated last year
• SmritiChawla / Precily
  ☆31Updated 3 years ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆32Updated 2 months ago
• ruppinlab / PERCEPTION
  Utilizing single-cell omics from patients tumor to predict response and resistance.
  ☆71Updated 2 years ago
• altoslabs / perturbench
  ☆42Updated 4 months ago