Alternatives and similar repositories for HarmonizomePythonScripts

Users that are interested in HarmonizomePythonScripts are comparing it to the libraries listed below

• cmap / lincs-workshop-2020
  CMap Notebooks for LINCS 2020 Workshop
  ☆46Updated 3 years ago
• cmap / cmapM
  Connectivity Map analysis in MATLAB
  ☆45Updated 3 years ago
• TeoSakel / deep-drug-response
  ☆19Updated 4 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆43Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆37Updated 2 years ago
• crazyhottommy / Machine_learning_drug_discovery
  ☆27Updated 2 months ago
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆29Updated 2 years ago
• regeneron-mpds / TCRAI
  ☆17Updated 3 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• MaayanLab / archs4py
  Python package to load and query ARCHS4 data
  ☆22Updated 2 months ago
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆23Updated 6 months ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆34Updated 3 years ago
• mickaelleclercq / BioDiscML
  Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data
  ☆30Updated last year
• carpenter-singh-lab / 2022_Haghighi_NatureMethods
  High-Dimensional Gene Expression and Morphology Profiles of Cells across 28,000 Genetic and Chemical Perturbations
  ☆48Updated 4 months ago
• NeilPearson-Lilly / TractaViewer
  ☆11Updated 5 years ago
• cole-trapnell-lab / sci-plex
  repository containing analysis scripts and auxiliary files
  ☆34Updated 5 years ago
• kekegg / DLEPS
  A Deep Learning based Efficacy Prediction System for drug discovery
  ☆66Updated 2 years ago
• cclab-brca / neoadjuvant-therapy-response-predictor
  ☆55Updated 2 years ago
• zuozhaorui / SWnet
  Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…
  ☆20Updated 3 years ago
• KristinaPreuer / DeepSynergy
  ☆33Updated 7 years ago
• CSB5 / CaDRReS
  Cancer Drug Response prediction using a Recommender System
  ☆42Updated last year
• zzz2010 / 5UTR_Optimizer
  Code for 5UTR project
  ☆24Updated 2 years ago
• davidnboone / tcga_brca_rnaseq
  jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data
  ☆32Updated 6 years ago
• idekerlab / pyNBS
  Python 2.7 implementation of network-based stratification (NBS) algorithm from Hofree et al (Nature Methods 2013)
  ☆37Updated 7 months ago
• Christensen-Lab-Dartmouth / PyMethylProcess
  Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
  ☆36Updated 5 years ago
• DabinJeong / GOAT_multi-omics_biomarker
  Multi-omics biomarker discovery tool exploiting a gene-gene interaction network
  ☆17Updated last year
• fraenkel-lab / OmicsIntegrator2
  Prize-Collecting Steiner Forests for Interactomes
  ☆59Updated 11 months ago
• lanagarmire / Asgard
  ☆42Updated last year
• shooshtarilab / TMExplorer
  A collection of tumour microenvironment single-cell RNA sequencing datasets for use in R and other pipelines.
  ☆18Updated 3 years ago