Python code to color a PDB structure based on parameters from a multiple sequence alignment
☆33Oct 12, 2026Updated last week
Alternatives and similar repositories for pdbcolor
Users that are interested in pdbcolor are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ancestral sequence reconstruction with gap-state inference using IQ-TREE☆16Jul 26, 2026Updated 2 months ago
- A translator from IUPAC representations of glycans into SMILES☆18Aug 19, 2025Updated last year
- Pandas DataFrames for phylogenetics☆75Jun 6, 2021Updated 5 years ago
- ☆10Jan 18, 2023Updated 3 years ago
- Compute N50/NG50 and auN/auNG☆34Oct 7, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆12Feb 22, 2022Updated 4 years ago
- QuickProt: A Fast and Accurate Homology-Based Protein Annotation Tool for Non-Model Organisms to Advance Comparative Genomics☆25Sep 25, 2026Updated 3 weeks ago
- bioinformatics visualization tools with pyviz/bokeh☆20Sep 30, 2023Updated 3 years ago
- ☆15Feb 23, 2026Updated 7 months ago
- PREVENT: PRotein Engineering by Variational frEe eNergy approximaTion☆13Jul 4, 2024Updated 2 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 6 years ago
- An R package for using dplyr on matched tree and data objects☆33Feb 19, 2025Updated last year
- alphafold FAPE loss☆10Sep 28, 2021Updated 5 years ago
- A common units module for the OpenFF software stack☆10Oct 9, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generated color schemes for sequence alignment visualizations☆18Jul 20, 2022Updated 4 years ago
- CNV Rapid Aberration Detection And Reporting☆13Mar 2, 2021Updated 5 years ago
- k-Bags Convolutional Neural Network☆11Jun 8, 2025Updated last year
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Oct 26, 2021Updated 4 years ago
- ☆10Mar 10, 2023Updated 3 years ago
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆17Jun 19, 2021Updated 5 years ago
- Snakemake workflow for comparing E-G links to experimental data☆25Sep 10, 2026Updated last month
- A multiple alignment analyser☆21Aug 12, 2026Updated 2 months ago
- The Nutmeg machine learning models☆11Jan 23, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆98Nov 25, 2025Updated 10 months ago
- WAVES is a reusable web application dedicated to bioinformatic tool integration☆16Mar 28, 2026Updated 6 months ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago
- Tutorials and examples for nicer animations (movies) and images in PyMOL.☆21Oct 6, 2026Updated 2 weeks ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 6 months ago
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆21Feb 6, 2023Updated 3 years ago
- HyPhy standalone analyses☆56Jan 5, 2026Updated 9 months ago
- Paired REad TEXTure Mapper. Converts SAM formatted read pairs into genome contact maps.☆28Jul 15, 2026Updated 3 months ago
- PyPEF – Pythonic Protein Engineering Framework☆17Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Machine learning model for predicting Human Oral Bioavailability☆13Dec 16, 2021Updated 4 years ago
- Some practical theoretic background needed for running MD simulations☆23Jun 2, 2026Updated 4 months ago
- Open Source Antibiotics Series 2☆10Jan 23, 2023Updated 3 years ago
- convert various features into a GFF-like file for use in genome browsers☆73Jun 17, 2026Updated 4 months ago
- A collection of snakemake scripts to streamline genome annotation☆14Mar 24, 2026Updated 6 months ago
- MegEngine implementation of Diffusion Models.☆19Aug 8, 2022Updated 4 years ago
- Benchmarking scripts for Gaia☆17Apr 10, 2025Updated last year