wrf / pdbcolor
Python code to color a PDB structure based on parameters from a multiple sequence alignment
☆32Updated last year
Alternatives and similar repositories for pdbcolor:
Users that are interested in pdbcolor are comparing it to the libraries listed below
- Evolutionary conservation estimation of residues or nucleotides☆41Updated 3 years ago
- A domain parser for Alphafold models☆36Updated last year
- Python framework for doing ancestral sequence reconstruction☆38Updated 10 months ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- ☆38Updated 7 months ago
- Fast protein domain structure embedding+search tool☆19Updated this week
- Detection of remote homology by comparison of protein language model representations☆51Updated 4 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆29Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- ☆34Updated last week
- ☆28Updated 11 months ago
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆22Updated last week
- GraphPart, a data partitioning method for ML on biological sequences☆26Updated last year
- ☆22Updated last year
- ☆36Updated 6 months ago
- ProtNote is a multimodal deep learning model that leverages free-form text to enable both supervised and zero-shot protein function predi…☆37Updated last week
- Transmembrane proteins predicted through Language Model embeddings☆35Updated 3 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆56Updated 5 months ago
- The aim of this repository is to provide simple tools to help those working with ColabFold BATCH both for pre and post-processing steps.☆16Updated last year
- a pipeline to build similarity maps of protein space☆34Updated 5 months ago
- Next generation sequence parameter library for proteins☆30Updated this week
- Code for LazyAF pipeline☆20Updated last year
- Singularity recipe for AlphaFold☆36Updated 5 months ago
- ColabFold protocol☆50Updated 6 months ago
- ☆10Updated last year
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 4 months ago
- ☆30Updated last year
- DeepECtransformer☆24Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆54Updated last month
- Fast indexing and search of discontinuous motifs in protein structures☆22Updated 2 months ago