wrf / pdbcolorLinks
Python code to color a PDB structure based on parameters from a multiple sequence alignment
☆32Updated 2 years ago
Alternatives and similar repositories for pdbcolor
Users that are interested in pdbcolor are comparing it to the libraries listed below
Sorting:
- Evolutionary conservation estimation of residues or nucleotides☆47Updated 3 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆91Updated last year
- Detection of remote homology by comparison of protein language model representations☆54Updated 8 months ago
- Feature map and function annotation of Proteins☆33Updated last year
- ☆22Updated 2 years ago
- Fast protein domain structure embedding+search tool☆25Updated 3 months ago
- Long disorder consensus predictor☆16Updated 5 months ago
- A domain parser for Alphafold models☆40Updated last year
- ColabFold protocol☆52Updated 10 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- ☆40Updated 2 weeks ago
- GraphPart, a data partitioning method for ML on biological sequences☆29Updated last year
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Code for LazyAF pipeline☆20Updated last year
- Mutation effects predicted from sequence co-variation☆68Updated 7 years ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated 11 months ago
- DeepECtransformer☆26Updated last year
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆58Updated 4 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆59Updated last month
- Protein discovery tool for mining in the Alphafold database based on the position of few amino acids.☆24Updated 2 months ago
- PLMAlign utilizes per-residue embeddings as input to obtain specific alignments and more refined similarity☆20Updated 8 months ago
- ☆43Updated 11 months ago
- ☆22Updated 3 months ago
- Evolutionary velocity with protein language models☆94Updated last year
- PLMSearch enables accurate and fast homologous protein search with only sequences as input☆73Updated 8 months ago
- Rendering protein mutation movies from predicted 3D structures☆20Updated last year
- Fast protein structure searching or your money back☆111Updated 4 months ago
- Python framework for doing ancestral sequence reconstruction☆41Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year