Alternatives and similar repositories for Microarray-Analysis

Users that are interested in Microarray-Analysis are comparing it to the libraries listed below

• dlaperriere / GEO_microarrays
  analyze_geo_microarrays.py : Differential expression analysis of published microarrays datasets from the NCBI Gene Expression Omnibus (GE…
  ☆10Updated 3 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• aertslab / GENIE3
  GENIE3 (GEne Network Inference with Ensemble of trees) R-package
  ☆30Updated 3 years ago
• ConesaLab / TCR_nextflow
  ☆12Updated 3 years ago
• friedue / course_RNA-seq2019
  ☆35Updated 3 years ago
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆15Updated 4 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆22Updated 10 months ago
• schillerlab / sc-toolbox
  A collection of project templates and useful functions for single-cell data analysis with Scanpy.
  ☆20Updated last year
• broadinstitute / single_cell_classification
  Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles
  ☆29Updated 5 years ago
• oscar-franzen / adobo
  functions and algorithms for single cell RNA-seq analyses
  ☆12Updated 4 years ago
• ktrns / scrnaseq
  Workflow for single-cell RNA-seq analysis using Seurat
  ☆41Updated last year
• cellatlas / human
  ☆43Updated 6 months ago
• scverse / muon-tutorials
  Tutorials for multimodal omics data analysis
  ☆14Updated 2 months ago
• pachterlab / BBB
  Bioinformatics for Benched Biologists
  ☆22Updated 5 years ago
• KenLauLab / dropkick
  Automated cell filtering for single-cell RNA sequencing data
  ☆24Updated last year
• bjornwallner / ML_medbioinfo
  Machine Learning in Medical Bioinformatics
  ☆24Updated 3 weeks ago
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated last month
• bigbioinformatics / single_cell_rna_seq_workshop
  repository for the single cell RNA-Seq workshop
  ☆28Updated 4 years ago
• uc-bd2k / GREIN
  GREIN : GEO RNA-seq Experiments Interactive Navigator
  ☆49Updated 5 years ago
• kuanrongchan / STAGES
  ☆33Updated 2 months ago
• interactivereport / xOmicsShiny
  R Shiny application for cross omics data analysis. In revision with Bioinformatics Adv.
  ☆25Updated last week
• scottgigante / machine-learning-tutorial
  Machine learning tutorial for biologists, designed for Oz Single Cells 2019
  ☆15Updated 5 years ago
• aertslab / scenicplus_analyses
  SCENIC+ analyses
  ☆14Updated last year
• ParkerLab / bioinf545
  ATAC-seq lab for BIOINF545
  ☆25Updated 2 months ago
• getzlab / CPTAC_PanCan_PTM_2023
  ☆16Updated last year
• astrazeneca-cgr-publications / JARVIS
  JARVIS: a comprehensive deep learning framework to prioritise non-coding variants in whole genomes
  ☆23Updated 4 months ago
• tavareshugo / data-carpentry-rnaseq
  ☆22Updated 4 years ago
• EngreitzLab / ABC-GWAS-Paper
  Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021
  ☆15Updated 4 years ago
• hukai916 / scATACpipe
  ☆27Updated 6 months ago