linsalrob / fastq-pairLinks
Match up paired end fastq files quickly and efficiently.
☆153Updated last year
Alternatives and similar repositories for fastq-pair
Users that are interested in fastq-pair are comparing it to the libraries listed below
Sorting:
- BAM Statistics, Feature Counting and Annotation☆151Updated 2 weeks ago
- ☆122Updated 6 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 3 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆109Updated 5 months ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆195Updated last week
- Tools for plotting methylation data in various ways☆170Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆68Updated 9 months ago
- FEELnc : FlExible Extraction of LncRNA☆93Updated 6 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 4 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆117Updated 5 years ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆114Updated last week
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆109Updated 2 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆119Updated this week
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆149Updated 2 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 6 months ago
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆98Updated 3 months ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆84Updated 3 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆58Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆76Updated 4 years ago
- ☆150Updated 2 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 3 years ago
- GATK RNA-Seq Variant Calling in Nextflow☆138Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆98Updated last month
- ☆110Updated 2 months ago
- Technology agnostic long read analysis pipeline for transcriptomes☆156Updated 2 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆112Updated 7 months ago
- Detecting contamination in NGS data and multi-species analysis☆82Updated 3 months ago
- Automatically exported from code.google.com/p/ea-utils☆96Updated 2 years ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆124Updated 5 months ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago