MikeAxtell / ShortStack
ShortStack: Comprehensive annotation and quantification of small RNA genes
☆88Updated this week
Related projects: ⓘ
- Python programs for processing GFF3 files☆94Updated 5 months ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.☆86Updated 2 months ago
- Accurate and rapid RiboRNA sequences Detector based on deep learning☆96Updated 8 months ago
- Meta-pipeline to identify transposable element insertions using next generation sequencing data☆92Updated 8 months ago
- Same species annotation lift over pipeline.☆95Updated last year
- ☆80Updated this week
- Dfam Transposable Element Tools Docker container.☆82Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆65Updated 9 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆88Updated 2 years ago
- PacBio Assembly Tool Suite: Reads in ⇨ Assembly out☆113Updated 4 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆51Updated last year
- BAM Statistics, Feature Counting and Annotation☆142Updated this week
- ☆94Updated this week
- FEELnc : FlExible Extraction of LncRNA☆80Updated last week
- A tool to identify, orient, trim and rescue full length cDNA reads☆78Updated 2 years ago
- ☆139Updated last week
- FunGAP: fungal Genome Annotation Pipeline☆108Updated 10 months ago
- ☆110Updated 2 years ago
- ☆76Updated 3 years ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 3 years ago
- accurate LiftOver tool for new genome assemblies☆106Updated last month
- a tool for inferring species tree from sequencing reads☆141Updated 4 months ago
- Workflow for Building Microsynteny Networks☆48Updated 2 years ago
- Development version of Easyfig☆87Updated 8 months ago
- pbsv - PacBio structural variant (SV) calling and analysis tools☆125Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆105Updated 2 weeks ago
- PHAST☆67Updated last year
- Match up paired end fastq files quickly and efficiently.☆139Updated 3 months ago
- A package for designing compact and comprehensive capture probe sets.☆73Updated 7 months ago