lskatz / awesome-bioinformatics-educationLinks
resources for bioinformatics education
☆84Updated last month
Alternatives and similar repositories for awesome-bioinformatics-education
Users that are interested in awesome-bioinformatics-education are comparing it to the libraries listed below
Sorting:
- Resources for bioinformatics jobs☆51Updated last year
- (Meta-)genome screening for functional and natural product gene sequences☆87Updated last week
- Snakemake workflow for metagenomic classification with Kraken2☆65Updated 2 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated 3 weeks ago
- Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing☆119Updated last year
- ☆82Updated last year
- Analysis of metagenomic shotgun sequences including assembly, speciation, ARG discovery and more☆32Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.☆54Updated last week
- Making whole bacterial genome sequencing data analysis easy☆107Updated 2 months ago
- CLI tool to annotate genes with KOfam☆80Updated 2 years ago
- Metagenomic classification of long-read sequencing data☆85Updated last month
- PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)☆99Updated this week
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆84Updated last year
- Nextflow pipeline to analyze PacBio HiFi full-length 16S data☆77Updated 4 months ago
- Bioinformatics Pipeline and Visualization resources☆55Updated 9 months ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 4 months ago
- Reference-guided multiple sequence alignment of viral genomes☆68Updated 2 weeks ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated last month
- Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWoo…☆55Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆60Updated 9 months ago
- ARG normalization by mapping to the ARO ontology.☆57Updated this week
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆57Updated last month
- An R package designed for drawing gene arrow maps☆79Updated last week
- SHallow shOtGUN profiler☆54Updated 3 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters☆88Updated 11 months ago
- seqfu - Sequece Fastx Utilities☆116Updated 5 months ago
- Simple bacterial assembly and annotation pipeline☆75Updated 3 weeks ago
- ☆72Updated last month