Alternatives and similar repositories for awesome-bioinformatics-education

Users that are interested in awesome-bioinformatics-education are comparing it to the libraries listed below

• nf-core / funcscan
  (Meta-)genome screening for functional and natural product gene sequences
  ☆92Updated last month
• GenomicsAotearoa / metagenomics_summer_school
  Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber
  ☆63Updated 11 months ago
• grimmlab / MicrobiomeBestPracticeReview
  Current Challenges and Best Practice Protocols for Microbiome Analysis using Amplicon and Metagenomic Sequencing
  ☆121Updated last year
• Wytamma / GISAIDR
  Programmatically interact with the GISAID database.
  ☆78Updated 3 weeks ago
• AstrobioMike / bit
  Bioinformatics Tools
  ☆89Updated this week
• nvelden / geneviewer
  An R package designed for drawing gene arrow maps
  ☆87Updated last month
• bpucker / teaching
  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.
  ☆52Updated last month
• husonlab / megan-ce
  MEGAN Community Edition
  ☆73Updated last year
• lskatz / awesome-bioinformatics-jobs
  Resources for bioinformatics jobs
  ☆52Updated last month
• sherrillmix / taxonomizr
  Parse NCBI taxonomy and accessions to find taxonomic assignments
  ☆77Updated last month
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 7 months ago
• bhattlab / bhattlab_workflows
  Computational workflows for metagenomics tasks, by the Bhatt lab
  ☆47Updated 2 years ago
• telatin / seqfu2
  seqfu - Sequece Fastx Utilities
  ☆120Updated 7 months ago
• Mykrobe-tools / mykrobe
  Antibiotic resistance prediction in minutes
  ☆111Updated 9 months ago
• SPAAM-community / AncientMetagenomeDir
  Repository containing lists of all published ancient metagenomic (and related) samples and libraries
  ☆75Updated this week
• drostlab / orthologr
  Genome wide orthology inference and dNdS estimation
  ☆95Updated last year
• khyox / recentrifuge
  Recentrifuge: robust comparative analysis and contamination removal for metagenomics
  ☆98Updated 3 months ago
• nf-core / bacass
  Simple bacterial assembly and annotation pipeline
  ☆75Updated 3 weeks ago
• caitiecollins / treeWAS
  treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
  ☆104Updated 6 months ago
• knights-lab / SHOGUN
  SHallow shOtGUN profiler
  ☆54Updated 3 years ago
• bhattlab / kraken2_classification
  Snakemake workflow for metagenomic classification with Kraken2
  ☆66Updated 2 years ago
• merenlab / illumina-utils
  A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
  ☆92Updated last year
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆31Updated 2 months ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆79Updated 5 months ago
• shenwei356 / perfect-bioinformatic-tools
  What should perfect bioinformatic tools be like?
  ☆131Updated 3 months ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆108Updated 3 weeks ago
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆56Updated last year
• mgalardini / pyseer
  SEER, reimplemented in python 🐍🔮
  ☆123Updated 3 months ago
• niemasd / TreeCluster
  Efficient phylogenetic clustering of viral sequences
  ☆89Updated last year