resources for bioinformatics education
☆114Jun 15, 2026Updated 4 months ago
Alternatives and similar repositories for awesome-bioinformatics-education
Users that are interested in awesome-bioinformatics-education are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python package to update the MLST database for the mlst tool.☆33Jul 22, 2026Updated 3 months ago
- A tool to aid virus sequencing and accelerate IRMA.☆13Updated this week
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- Benchmark and toy datasets☆12Jan 8, 2025Updated last year
- Plasmid analysis using rearrangement distances☆56Oct 30, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆68Jun 16, 2025Updated last year
- A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) allele caller.☆34Oct 14, 2026Updated 3 weeks ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- A flexible pipeline for complete analysis of bacterial genomes☆526Aug 5, 2026Updated 3 months ago
- Read contamination removal☆24Jan 24, 2024Updated 2 years ago
- A nextflow version of the Wochenende reference metagenome binning and visualization pipeline☆16Mar 4, 2026Updated 8 months ago
- The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTML Interactive Coverage Plot given coverage depth informat…☆19May 3, 2024Updated 2 years ago
- Viral (meta)-genome assembly pipeline.☆24Sep 8, 2026Updated last month
- ☆10Jun 9, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆39Oct 31, 2026Updated last week
- Taxonomy classification of viral sequences / contigs☆13Jul 15, 2025Updated last year
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Updated this week
- ☆20Sep 16, 2026Updated last month
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Oct 27, 2026Updated last week
- Build phylogenomic datasets in seconds☆15Oct 28, 2026Updated last week
- Remove human reads from a sequencing run☆54Jun 29, 2026Updated 4 months ago
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆97Jul 23, 2026Updated 3 months ago
- Pipeline for creating comprehensive viral reference sets.☆12Oct 28, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A curated database of completed assemblies with taxonomy IDs☆53Oct 27, 2026Updated last week
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆43May 2, 2026Updated 6 months ago
- Reorients assembled microbial sequences☆145Jun 30, 2026Updated 4 months ago
- Compute a pairwise SNP distance matrix from one or two alignment(s)☆27Sep 12, 2024Updated 2 years ago
- emm Automatic Isolate Labeller☆16Mar 25, 2025Updated last year
- Databases for wg/cgMLST analysis with the PN2.0 software☆10May 7, 2026Updated 5 months ago
- Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of bot…☆13Sep 1, 2026Updated 2 months ago
- Resources for bioinformatics jobs☆83Oct 12, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.☆108Jan 22, 2026Updated 9 months ago
- Bioinformatics tool for Locus Visualisation☆176Mar 30, 2026Updated 7 months ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Development has moved to GitLab: https://gitlab.com/cgps/tools/speccheck. A bioinformatics software focused on quality control based on s…☆15Updated this week
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆61Mar 23, 2023Updated 3 years ago
- Colinear block visualisation tool☆32Jan 17, 2024Updated 2 years ago
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆22Oct 8, 2025Updated last year