Alternatives and similar repositories for grenepipe

Users that are interested in grenepipe are comparing it to the libraries listed below

• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆119Updated 2 years ago
• adamewing / methylartist
  Tools for plotting methylation data in various ways
  ☆165Updated 2 weeks ago
• SorenKarst / longread_umi
  ☆80Updated 5 years ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆101Updated last month
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆105Updated 6 months ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆120Updated 2 months ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆111Updated 3 months ago
• thlee / SNPhylo
  A pipeline to generate a phylogenetic tree from huge SNP data
  ☆92Updated last year
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆200Updated 4 months ago
• PacificBiosciences / pb-assembly
  PacBio Assembly Tool Suite: Reads in ⇨ Assembly out
  ☆118Updated 5 years ago
• ComparativeGenomicsToolkit / hal
  Hierarchical Alignment Format
  ☆173Updated this week
• nadegeguiglielmoni / genome_assembly_tools
  List of genome assembly tools
  ☆87Updated last week
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• DessimozLab / read2tree
  a tool for inferring species tree from sequencing reads
  ☆155Updated 2 months ago
• NAL-i5K / GFF3toolkit
  Python programs for processing GFF3 files
  ☆102Updated last year
• parklab / bamsnap
  ☆122Updated 4 months ago
• EVidenceModeler / EVidenceModeler
  source code for EVM
  ☆119Updated last year
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆122Updated last year
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆139Updated last year
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆143Updated 4 months ago
• epi2me-labs / wf-basecalling
  ☆46Updated 2 weeks ago
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• MariaNattestad / Assemblytics
  Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…
  ☆145Updated 5 months ago
• medvedevgroup / SibeliaZ
  A fast whole-genome aligner based on de Bruijn graphs
  ☆153Updated 5 months ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆91Updated last year
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• jtlovell / GENESPACE
  ☆226Updated 10 months ago
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆108Updated last week