Filter SAM file for soft and hard clipped alignments
☆53Dec 31, 2025Updated 10 months ago
Alternatives and similar repositories for samclip
Users that are interested in samclip are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🍗⭐ In silico Legionella pneumophila Sequence Based Typing☆13Feb 8, 2026Updated 8 months ago
- Filtering and trimming of long read sequencing data☆219Jan 16, 2023Updated 3 years ago
- In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies☆10Aug 6, 2024Updated 2 years ago
- Pneumococcal Capsular Typing tool for NGS data☆18Apr 6, 2021Updated 5 years ago
- A tool easily taken advantage of for in silico serogrouping of Pseudomonas aeruginosa isolates☆15Aug 26, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆26Nov 14, 2025Updated 11 months ago
- Long read aligner☆115May 26, 2023Updated 3 years ago
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- The tool for in silico serotyping☆66Oct 26, 2026Updated last week
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- emm Automatic Isolate Labeller☆16Mar 25, 2025Updated last year
- Hybrid error correction of long reads using colored de Bruijn graphs☆109Jan 17, 2026Updated 9 months ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Mar 29, 2023Updated 3 years ago
- Bifrost graph gene caller.☆102Aug 31, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Fast and scalable nanopore adaptive sampling☆37Jun 6, 2023Updated 3 years ago
- Extract SNPs and accessory differences in closely related bacterial genomes from k-mers☆10Jan 6, 2024Updated 2 years ago
- ☆39Jan 12, 2026Updated 9 months ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Oct 27, 2026Updated last week
- Create statistic summary of an Oxford Nanopore read dataset☆140Nov 4, 2022Updated 4 years ago
- ☆63Sep 15, 2025Updated last year
- Noise-Cancelling Repeat Finder☆27Apr 2, 2026Updated 7 months ago
- Minimal but speedy quality control for nanopore reads in Rust☆140Sep 16, 2024Updated 2 years ago
- The Pathogenwatch Vibrio cholerae genotyping tool☆11Oct 9, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 5 years ago
- In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)☆10Jun 17, 2026Updated 4 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Apr 22, 2020Updated 6 years ago
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 6 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆158Dec 31, 2025Updated 10 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆49Jul 24, 2025Updated last year
- ☆52Jun 25, 2024Updated 2 years ago
- Assemble bacterial isolate genomes from Nanopore reads☆136Jan 22, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Analyzing sketching and sampling approaches for fast and accurate read classification☆10Aug 30, 2022Updated 4 years ago
- a Contig Alignment Tool for Pairwise Assembly Comparison☆12Dec 11, 2019Updated 6 years ago
- Phasing for metagenomics using PacBio long reads☆16Jul 14, 2021Updated 5 years ago
- Remove human reads from a sequencing run☆54Jun 29, 2026Updated 4 months ago
- De novo genome assembler for long uncorrected reads☆238Nov 15, 2023Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆59Updated this week
- MUM&Co uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation☆76Jan 12, 2026Updated 9 months ago