tseemann / samclip
Filter SAM file for soft and hard clipped alignments
☆48Updated 11 months ago
Alternatives and similar repositories for samclip
Users that are interested in samclip are comparing it to the libraries listed below
Sorting:
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆65Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Simple pileup-based variant caller☆89Updated 2 weeks ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆55Updated 2 years ago
- Structural variant caller☆54Updated 3 years ago
- python plotly Circos from VCF☆35Updated 10 months ago
- ☆29Updated 4 years ago
- A local-haplotagging-based small and structural variant caller☆76Updated last week
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 4 months ago
- ☆79Updated 2 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆66Updated 2 weeks ago
- DNA methylation analysis downstream to Nanopolish for Oxford Nanopore DNA sequencing datasets☆34Updated 4 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆48Updated 6 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆115Updated 3 weeks ago
- new repo☆28Updated 3 years ago
- perSVade: personalized Structural Variation detection☆39Updated 2 months ago
- A reference viral database (RVDB)☆26Updated 6 years ago
- ☆46Updated 8 months ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- Generate unique KMERs for every contig in a FASTA file☆48Updated 2 years ago
- ☆61Updated last month
- ☆43Updated 8 years ago