Alternatives and similar repositories for StainedGlass:

Users that are interested in StainedGlass are comparing it to the libraries listed below

• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆94Updated 7 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆93Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆110Updated 3 weeks ago
• daewoooo / SVbyEye
  ☆74Updated 3 months ago
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 2 months ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆85Updated 9 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆111Updated 6 months ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆121Updated this week
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• marschall-lab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆91Updated this week
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆70Updated last month
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆54Updated 2 years ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆113Updated last month
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆71Updated 3 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆96Updated last year
• kjenike / panagram
  ☆61Updated last week
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆62Updated last year
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆48Updated 4 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆75Updated 10 months ago
• c-zhou / oatk
  A organelle de novo genome assembly toolkit
  ☆51Updated last month
• wdecoster / cramino
  A *fast* tool for BAM/CRAM quality evaluation, intended for long reads
  ☆131Updated last month
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆118Updated 5 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆111Updated 3 weeks ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆52Updated last year
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆87Updated last month
• 0xTCG / biser
  A fast tool for detecting and decomposing segmental duplications in genome assemblies
  ☆45Updated 11 months ago
• bergmanlab / mcclintock
  Meta-pipeline to identify transposable element insertions using next generation sequencing data
  ☆95Updated last year
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆112Updated 3 months ago
• DyogenIBENS / Agora
  Algorithm For Gene Order Reconstruction in Ancestors
  ☆72Updated 2 months ago