Alternatives and similar repositories for StainedGlass

Users that are interested in StainedGlass are comparing it to the libraries listed below

• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 5 months ago
• daewoooo / SVbyEye
  ☆131Updated 2 months ago
• alekseyzimin / EviAnn_release
  This is the standalone version of the EviAnn pipeline
  ☆97Updated this week
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆80Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆118Updated last week
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆90Updated last month
• codialab / panacus
  Panacus is a tool for computing statistics for GFA-formatted pangenome graphs
  ☆111Updated last month
• Gaius-Augustus / TSEBRA
  TSEBRA: Transcript Selector for BRAKER
  ☆47Updated 8 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆119Updated last month
• DessimozLab / OMArk
  ☆74Updated this week
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆107Updated this week
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆68Updated last year
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆57Updated 2 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 2 months ago
• DerKevinRiehl / TransposonUltimate
  TransposonUltimate - a holistic set of tools for transposon identification
  ☆84Updated 3 years ago
• mapleforest / HaploMerger2
  ☆44Updated 8 years ago
• PacificBiosciences / pb-CpG-tools
  Collection of tools for the analysis of CpG data
  ☆86Updated last week
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆43Updated last week
• yeeus / GCI
  A program for assessing the T2T genome continuity
  ☆81Updated 2 weeks ago
• mahulchak / svmu
  A program to call variants from genome alignment
  ☆81Updated 2 months ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆96Updated last year
• kiranbandi / synvisio
  SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity …
  ☆86Updated last year
• TF-Chan-Lab / panGraphViewer
  Show pangenome graphs in an easy way
  ☆56Updated 2 years ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated last year
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆67Updated 4 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆55Updated last week
• ArimaGenomics / mapping_pipeline
  Mapping pipeline for data generated using Arima-HiC
  ☆78Updated last year
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆130Updated 3 weeks ago