mrvollger / StainedGlassLinks
Make colorful identity heatmaps of genomic sequence
☆120Updated last year
Alternatives and similar repositories for StainedGlass
Users that are interested in StainedGlass are comparing it to the libraries listed below
Sorting:
- ☆134Updated 3 months ago
- Pipeline to convert a haploid assembly into diploid☆102Updated 6 months ago
- Pangenome-based genome inference☆135Updated last week
- A list of software for pangenomics☆121Updated 2 weeks ago
- TEtrimmer: a novel tool to automate manual curation of transposable elements☆75Updated this week
- Collection of tools for the analysis of CpG data☆89Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆111Updated this week
- Structural Variant Identification Method using Genome Assemblies☆121Updated 2 years ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆122Updated last week
- Phased assembly variant caller☆123Updated 8 months ago
- This is the standalone version of the EviAnn pipeline☆109Updated last week
- Simple pileup-based variant caller☆91Updated 3 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 6 months ago
- Reference-free profiling of polyploid genomes☆120Updated 2 months ago
- accurate LiftOver tool for new genome assemblies☆133Updated last year
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Mapping pipeline for data generated using Arima-HiC☆79Updated last year
- Application of pan-genome for population☆108Updated 9 months ago
- Neural network classification of TE☆92Updated 2 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆108Updated last year
- Snakemake workflow for highly parallel variant calling designed for ease-of-use in non-model organisms.☆80Updated last month
- High-precision TE Annotator☆122Updated last month
- Dfam Transposable Element Tools Docker container.☆99Updated last month
- NLR-Annotator upload☆69Updated 2 years ago
- SRF: Satellite Repeat Finder☆97Updated last year
- TransposonUltimate - a holistic set of tools for transposon identification☆84Updated 3 years ago
- A program to call variants from genome alignment☆81Updated 3 months ago
- source code for EVM☆116Updated 8 months ago