AlexandrovLab / SigProfilerMatrixGeneratorRLinks
R wrapper for utilizing the SigProfilerMatrixGenerator framework
☆20Updated 2 years ago
Alternatives and similar repositories for SigProfilerMatrixGeneratorR
Users that are interested in SigProfilerMatrixGeneratorR are comparing it to the libraries listed below
Sorting:
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Gene-level general linear mixed model☆22Updated 5 months ago
- Cell type deconvolution from high-throughput gene expression profiling experiments.☆31Updated 4 years ago
- Sparse Partial correlation ON Gene Expression - an R package for fast and robust ceRNA network inference☆12Updated 10 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- An R package for multi-dimensional pathway enrichment analysis☆16Updated 2 months ago
- ☆12Updated last year
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- R package for benchmarking single cell analysis methods☆31Updated last year
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆12Updated 3 weeks ago
- Code for EpiMap data browser☆14Updated last year
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- R/Bioconductor package to interactively explore single cell clusters at multiple resolutions☆10Updated 3 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆22Updated 2 years ago
- DriverPower☆26Updated 5 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆16Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 6 months ago
- ☆14Updated 6 years ago
- Integrating zingeR with ZINB-WaVE weights☆24Updated 7 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 9 months ago
- ☆16Updated 2 years ago
- A method to rapidly assess cell type identity using both functional and random gene sets☆13Updated 6 years ago
- R package for Flexible dot plots☆29Updated 3 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- This repository contained single-cell RNA-seq datasets with ICB treated patients☆10Updated 7 months ago
- ☆16Updated 3 years ago