sgkit-dev / bio2zarr
Convert bioinformatics file formats to Zarr
☆28Updated last week
Related projects ⓘ
Alternatives and complementary repositories for bio2zarr
- a minimal, scriptable genome browser for python☆48Updated 6 months ago
- Read specialized NGS formats as data frames in R, Python, and more.☆62Updated 4 months ago
- bedtools-like functionality for interval sets in rust☆44Updated 3 months ago
- Analyse MalariaGEN data from Python☆14Updated this week
- A Rust library and command line tool for working with genomic ranges and their data.☆94Updated 5 months ago
- Fast sequencing data quality metrics☆17Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆57Updated 3 months ago
- pyranges/bioframe for polars☆17Updated last year
- A high-performance BigWig and BigBed library in Rust☆71Updated last week
- A template repository for snakemake workflows.☆35Updated 9 months ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- vembrane filters VCF records using python expressions☆57Updated last month
- gia: Genomic Interval Arithmetic☆51Updated 3 months ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last month
- bioinformatics toolkit in rust☆78Updated 6 months ago
- ☆14Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆54Updated last week
- Fast interval intersection library☆22Updated this week
- A python package for showing JBrowse views☆23Updated 10 months ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated last year
- Genome browser hub for the T2T genomes and resources☆16Updated 2 weeks ago
- Lossless VCF compression☆18Updated 2 years ago
- Introduction to Snakemake for Bioinformatics☆18Updated this week
- Tools for describing and manipulating demographic models.☆19Updated 5 months ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆12Updated last month
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 4 years ago
- A genome browser in your Jupyter notebook☆26Updated 7 months ago
- Snakemake profile for running jobs on an LSF cluster☆36Updated 3 months ago
- Python NGS Repository☆9Updated 3 months ago