sgkit-dev / bio2zarr
Convert bioinformatics file formats to Zarr
☆27Updated last week
Related projects ⓘ
Alternatives and complementary repositories for bio2zarr
- a minimal, scriptable genome browser for python☆48Updated 6 months ago
- Read specialized NGS formats as data frames in R, Python, and more.☆60Updated 4 months ago
- A high-performance BigWig and BigBed library in Rust☆70Updated this week
- pyranges/bioframe for polars☆16Updated last year
- bedtools-like functionality for interval sets in rust☆44Updated 2 months ago
- A utility script to manage local docker instances of HiGlass☆23Updated last year
- gia: Genomic Interval Arithmetic☆51Updated 2 months ago
- Phylogenetics toolkit for the PyData Ecosystem☆11Updated 5 months ago
- Fast FASTQ sample demultiplexing in Rust.☆57Updated 2 months ago
- Samwell: a python package for using genomic files... well☆19Updated 2 years ago
- Genome browser hub for the T2T genomes and resources☆16Updated last week
- A template repository for snakemake workflows.☆35Updated 9 months ago
- A genome browser in your Jupyter notebook☆26Updated 7 months ago
- Fast sequencing data quality metrics☆16Updated 3 weeks ago
- A Rust library for storing generic genomic data by sorted chromosome name☆17Updated last month
- Python NGS Repository☆9Updated 2 months ago
- The python binding for D4 format☆16Updated 3 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 2 years ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆53Updated 3 weeks ago
- A python package for showing JBrowse views☆23Updated 10 months ago
- A job submitter for Portable Encapsulated Projects☆20Updated last month
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆41Updated last year
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 4 months ago
- A template for standard compliant snakemake-workflows☆89Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆23Updated this week
- Snakemake profile for running jobs on an LSF cluster☆36Updated 3 months ago
- Access nextflow variables from python scripts or notebooks☆21Updated 3 years ago
- A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.☆14Updated 2 years ago