sgkit-dev / bio2zarrLinks
Convert bioinformatics file formats to Zarr
☆36Updated last month
Alternatives and similar repositories for bio2zarr
Users that are interested in bio2zarr are comparing it to the libraries listed below
Sorting:
- Partial reimplementation of bcftools for VCF Zarr☆16Updated 3 weeks ago
- a minimal, scriptable genome browser for python☆51Updated 6 months ago
- Oxbow makes genomic data ready for high-performance analytics.☆108Updated 3 weeks ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆38Updated last week
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- Convert vcf in parquet☆27Updated 5 months ago
- Fast sequencing data quality metrics☆26Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- A job submitter for Portable Encapsulated Projects☆22Updated 4 months ago
- gia: Genomic Interval Arithmetic☆65Updated 10 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- VCF Zarr Specification☆15Updated last month
- A Github action for running a Snakemake workflow☆59Updated last month
- pyranges/bioframe for polars☆18Updated last year
- Snakemake workflow management system and CLI generation tool☆58Updated last month
- Container class to represent genomic locations and support genomic analysis☆22Updated last week
- ☆16Updated 6 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Updated 2 years ago
- vembrane filters VCF records using python expressions☆61Updated this week
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Updated 5 years ago
- ☆10Updated 5 months ago
- Python language bindings for bwa☆10Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated last month
- an API for intersections of genomic data☆75Updated 3 weeks ago
- A high-performance BigWig and BigBed library in Rust☆98Updated last month
- Monitor computational workflows in real time☆74Updated last year
- Run shell commands in a scientifically reproducible and robust way☆17Updated 4 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Efficient variant-call data storage and retrieval library using the TileDB storage library.☆95Updated last month