sgkit-dev / bio2zarrLinks
Convert bioinformatics file formats to Zarr
☆42Updated 6 months ago
Alternatives and similar repositories for bio2zarr
Users that are interested in bio2zarr are comparing it to the libraries listed below
Sorting:
- a minimal, scriptable genome browser for python☆53Updated 11 months ago
- Partial reimplementation of bcftools for VCF Zarr☆19Updated 5 months ago
- pyranges/bioframe for polars☆18Updated 2 years ago
- Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library☆21Updated last month
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- Oxbow makes genomic data ready for high-performance analytics.☆144Updated last week
- Modular job submitter for arbitrary pipelines or commands.☆24Updated last month
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- A high-performance BigWig and BigBed library in Rust☆108Updated last month
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆123Updated this week
- A python package for showing JBrowse views☆26Updated last year
- Snakemake workflow management system and CLI generation tool☆63Updated last month
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆63Updated 2 weeks ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆45Updated this week
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 9 years ago
- Container class to represent genomic locations and support genomic analysis☆27Updated last week
- gia: Genomic Interval Arithmetic☆63Updated last year
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆31Updated 8 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆39Updated 6 months ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- Monitor computational workflows in real time☆74Updated last year
- Convert vcf in parquet☆27Updated 10 months ago
- Pyranges: a Python framework for ultrafast sequence interval operations☆28Updated last week
- Genotype Representation Graph Library☆37Updated last week
- Fast interval intersection library☆44Updated 3 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- ☆16Updated 11 months ago