pyranges / rurangesLinks
Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
☆18Updated last month
Alternatives and similar repositories for ruranges
Users that are interested in ruranges are comparing it to the libraries listed below
Sorting:
- a minimal, scriptable genome browser for python☆51Updated 11 months ago
- Container class to represent genomic locations and support genomic analysis☆25Updated last week
- bedtools-like functionality for interval sets in rust☆54Updated 3 months ago
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- ☆22Updated 2 years ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- PyRanges as a DataFrame subclass.☆24Updated 3 weeks ago
- Bam to Pandas DataFrame, quickly☆13Updated 6 months ago
- Processing and plotting tools for genomics data☆21Updated 3 months ago
- Fast sequencing data quality metrics☆30Updated 2 months ago
- pyranges/bioframe for polars☆18Updated 2 years ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last week
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 7 months ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated 3 weeks ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Red-C data processing☆15Updated 2 years ago
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆101Updated 2 weeks ago
- A high-performance BigWig and BigBed library in Rust☆107Updated 3 weeks ago
- vembrane filters VCF records using python expressions☆66Updated last month
- Reference genome resource manager☆74Updated last year
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- A tool for timing complex copy number gains in cancer.☆19Updated 3 months ago
- A Github action for running a Snakemake workflow☆61Updated last week
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated last week
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 5 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago