pyranges / rurangesLinks
Rust Backend for PyRanges Operations. More featureful and much faster replacement for the NCLS library
☆13Updated 3 weeks ago
Alternatives and similar repositories for ruranges
Users that are interested in ruranges are comparing it to the libraries listed below
Sorting:
- ☆22Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆53Updated 2 months ago
- a minimal, scriptable genome browser for python☆52Updated 9 months ago
- pyranges/bioframe for polars☆18Updated 2 years ago
- Bam to Pandas DataFrame, quickly☆13Updated 4 months ago
- Location of public benchmarking; primarily final results☆18Updated 7 months ago
- Container class to represent genomic locations and support genomic analysis☆25Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- Processing and plotting tools for genomics data☆21Updated last month
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- Fast sequencing data quality metrics☆28Updated 3 weeks ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- PyRanges as a DataFrame subclass.☆19Updated 2 weeks ago
- Model files for Sentieon variant callers☆16Updated 2 weeks ago
- Quality of life improvements for Bioinformatics in Python.☆31Updated last week
- A Rust library and command line tool for working with genomic ranges and their data.☆100Updated last year
- Bam Read Index - Extract alignments from a bam file by readname☆27Updated last year
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆33Updated 2 years ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 6 years ago
- Blazing fast toolkit to work with .hic and .cool files☆39Updated this week
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 3 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Simple pure Python SAM parser and objects for working with SAM records☆63Updated 3 years ago
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆23Updated 2 months ago
- Variant catalogue pipeline☆26Updated 5 months ago
- Single-pass probabilistic duplicate marking of alignments with a Bloom filter.☆23Updated 2 years ago
- Long RNA-seq analysis workflow☆20Updated 3 weeks ago
- vembrane filters VCF records using python expressions☆64Updated last week