Alternatives and similar repositories for ruranges

Users that are interested in ruranges are comparing it to the libraries listed below

• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• BiocPy / GenomicRanges
  Container class to represent genomic locations and support genomic analysis
  ☆27Updated last week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆55Updated 4 months ago
• pyranges / pyranges_1.x
  Pyranges: a Python framework for ultrafast sequence interval operations
  ☆34Updated 2 weeks ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated 3 weeks ago
• vsbuffalo / granges
  A Rust library and command line tool for working with genomic ranges and their data.
  ☆101Updated last year
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆64Updated 7 months ago
• pyranges / bamread
  Bam to Pandas DataFrame, quickly
  ☆13Updated 7 months ago
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆21Updated last week
• InscriptaLabs / BioCantor
  ☆22Updated 2 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆31Updated 3 months ago
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago
• TheJacksonLaboratory / pyBedGraph
  A Python package for fast operations on 1-dimensional genomic signal tracks
  ☆23Updated 5 years ago
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated 2 weeks ago
• derijkp / scywalker
  A program for the analysis of single cell nanopore long read data
  ☆20Updated 5 months ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated last month
• endrebak / poranges
  pyranges/bioframe for polars
  ☆18Updated 2 years ago
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆42Updated this week
• meuleman / epilogos
  Methods for summarizing and visualizing multi-biosample functional genomic annotations
  ☆46Updated 9 months ago
• VanLoo-lab / gritic
  A tool for timing complex copy number gains in cancer.
  ☆19Updated 3 weeks ago
• agalitsyna / RedClib
  Red-C data processing
  ☆15Updated 2 years ago
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• brentp / cigar
  simple library for dealing with SAM cigar strings
  ☆41Updated 4 years ago
• brentp / fraguracy
  overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites
  ☆33Updated 6 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 weeks ago
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆41Updated 2 months ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• MuhammedHasan / gencode_utr_fix
  Gencode UTR fix
  ☆15Updated 2 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 6 years ago
• harvardinformatics / NGmerge
  Merging paired-end reads and removing adapters
  ☆30Updated 5 years ago