hadim / read-roi
Read ROI files .zip or .roi generated with ImageJ.
☆51Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for read-roi
- Read and write ImageJ ROI format☆65Updated 2 months ago
- Tools for distributed alignment of massive images☆75Updated last week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 3 years ago
- A napari plugin for clustering objects according to their properties.☆80Updated this week
- A napari plugin for making animations☆79Updated 2 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 weeks ago
- StarDist plugin for napari☆36Updated 2 months ago
- A library to facilitate machine learning on multi-dimensional images.☆78Updated last month
- Utils and convenience functions for large-scale bio-image analysis.☆48Updated last month
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆31Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆125Updated 2 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆23Updated 4 years ago
- Convolutional Neural Network-Based Instance Segmentation Algorithm to Acquire Quantitative Criteria of Early Mouse Development☆31Updated last year
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆206Updated 3 months ago
- Automated mitochondrial segmentation and tracking.☆27Updated 3 years ago
- ☆52Updated 2 weeks ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆60Updated 2 weeks ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆60Updated 5 years ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- ☆22Updated 8 months ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆136Updated 2 weeks ago
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated last year
- Creating figures and animations for multi-channel images with a focus on microscopy.☆66Updated 2 years ago
- MorphoFeatures code and data☆18Updated last year
- Browse your OMERO database from within napari.☆33Updated 2 weeks ago
- GPU-accelerated general purpose image processing and image analysis in napari☆34Updated 3 weeks ago
- Resources for teaching/preparing to teach bioimage analysis☆48Updated last week
- A napari plugin for itk-elastix☆38Updated 5 months ago