hadim / read-roi
Read ROI files .zip or .roi generated with ImageJ.
☆53Updated 2 years ago
Alternatives and similar repositories for read-roi:
Users that are interested in read-roi are comparing it to the libraries listed below
- Read and write ImageJ ROI format.☆72Updated 2 months ago
- Tools for distributed alignment of massive images☆81Updated 3 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆54Updated last week
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Create movies from series of key-frames in napari.☆38Updated 3 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated this week
- A napari plugin for making animations☆84Updated 8 months ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆65Updated 5 years ago
- Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.☆48Updated last week
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated this week
- Running compute-intense parts of BigStitcher distributed☆26Updated 3 weeks ago
- ☆31Updated 4 years ago
- Python image segmentation plugin☆31Updated 4 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- StarDist plugin for napari☆38Updated 8 months ago
- A library to facilitate machine learning on multi-dimensional images.☆82Updated 3 weeks ago
- A napari plugin for itk-elastix☆38Updated 10 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- Track and lineage visualization with btrack and Napari☆45Updated 6 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆73Updated last week
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆136Updated this week
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆213Updated 3 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 2 weeks ago
- ☆45Updated 4 years ago
- AICS Segmentation (One-Way) Mirror☆45Updated 4 years ago
- The ImageJ framework for quantification of neuronal anatomy☆48Updated this week