hadim / read-roiLinks
Read ROI files .zip or .roi generated with ImageJ.
☆53Updated 3 years ago
Alternatives and similar repositories for read-roi
Users that are interested in read-roi are comparing it to the libraries listed below
Sorting:
- Read and write ImageJ ROI format.☆73Updated 2 months ago
- Tools for distributed alignment of massive images☆84Updated 3 weeks ago
- Utils and convenience functions for large-scale bio-image analysis.☆57Updated 3 weeks ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python☆215Updated 6 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated last month
- A napari plugin for making animations☆84Updated 10 months ago
- Please go to https://github.com/CRBS/cdeep3m2 for most recent version☆59Updated 5 years ago
- Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets☆165Updated 2 months ago
- ImgLib2/BDV implementation of Stitching for large datasets☆74Updated 2 months ago
- ☆45Updated 5 years ago
- A napari plugin for itk-elastix☆38Updated last year
- Python image segmentation plugin☆31Updated 4 years ago
- A library to facilitate machine learning on multi-dimensional images.☆83Updated last week
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 5 months ago
- StarDist plugin for napari☆38Updated 10 months ago
- Specification for the bioimage.io model description file.☆21Updated 2 weeks ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆65Updated last week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Easily read and write ome-tiff images in python☆27Updated last year
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- ☆35Updated 3 weeks ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated last week
- Creating figures and animations for multi-channel images with a focus on microscopy.☆77Updated 7 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆94Updated this week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆19Updated last year
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆67Updated 5 years ago
- GPU-accelerated bio-image analysis focusing on 3D+t microscopy image data☆230Updated 4 months ago