Alternatives and similar repositories for read-roi

Users that are interested in read-roi are comparing it to the libraries listed below

• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆74Updated 3 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆86Updated this week
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated 3 weeks ago
• napari / napari-animation
  A napari plugin for making animations
  ☆87Updated last month
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆52Updated this week
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆166Updated 3 months ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆123Updated this week
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆85Updated 3 weeks ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆219Updated 7 months ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆26Updated 6 months ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last year
• stardist / stardist-napari
  StarDist plugin for napari
  ☆39Updated last year
• PreibischLab / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆74Updated 3 weeks ago
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆51Updated 3 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆37Updated last year
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆69Updated 9 months ago
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆143Updated 2 months ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated this week
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆140Updated 2 months ago
• abcucberkeley / PetaKit5D
  ☆46Updated 2 weeks ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆67Updated 2 weeks ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆20Updated 2 years ago
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆78Updated 8 months ago
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆57Updated last week
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 10 months ago
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆35Updated 3 months ago