Alternatives and similar repositories for read-roi

Users that are interested in read-roi are comparing it to the libraries listed below

• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆83Updated 7 months ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆89Updated 2 months ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆58Updated 4 months ago
• napari / napari-animation
  A napari plugin for making animations
  ☆89Updated last week
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆174Updated 6 months ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆130Updated 2 weeks ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last week
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆62Updated last week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated last week
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated last week
• guiwitz / microfilm
  Creating figures and animations for multi-channel images with a focus on microscopy.
  ☆78Updated 11 months ago
• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆21Updated 2 weeks ago
• bauerdavid / napari-nD-annotator
  ☆37Updated this week
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆27Updated 9 months ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆86Updated last week
• CAREamics / careamics
  A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…
  ☆109Updated this week
• abcucberkeley / PetaKit5D
  ☆49Updated 3 weeks ago
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆33Updated 4 years ago
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆78Updated last month
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆142Updated 5 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 4 years ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆29Updated last week
• HenriquesLab / NanoPyx
  Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging
  ☆88Updated last week
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆87Updated last week
• haesleinhuepf / napari-skimage-regionprops
  Feature extraction for labeled objects in images using regionprops from scikit-image
  ☆52Updated 7 months ago
• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆26Updated 5 years ago
• sakoho81 / miplib
  A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.
  ☆84Updated 3 months ago