Alternatives and similar repositories for read-roi

Users that are interested in read-roi are comparing it to the libraries listed below

• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆91Updated 2 weeks ago
• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆83Updated 3 weeks ago
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆59Updated 3 weeks ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆63Updated last month
• napari / napari-animation
  A napari plugin for making animations
  ☆89Updated last week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆220Updated last month
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated 3 weeks ago
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆174Updated 7 months ago
• aelefebv / Mitometer
  Automated mitochondrial segmentation and tracking.
  ☆33Updated 4 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆132Updated 2 weeks ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆87Updated last week
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆78Updated 2 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 4 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆27Updated 10 months ago
• abcucberkeley / PetaKit5D
  ☆49Updated 3 weeks ago
• StructuralNeurobiologyLab / SyConn
  Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.
  ☆43Updated 5 months ago
• bauerdavid / napari-nD-annotator
  ☆37Updated last month
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆88Updated 2 weeks ago
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated last month
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆151Updated 3 months ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆20Updated 2 years ago
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• clEsperanto / napari_pyclesperanto_assistant
  GPU-accelerated general purpose image processing and image analysis in napari
  ☆36Updated 8 months ago
• napari / cookiecutter-napari-plugin
  Cookiecutter for napari plugins
  ☆71Updated last year
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 2 months ago
• morphonets / SNT
  The framework for quantification of neuronal anatomy
  ☆55Updated last week
• lens-biophotonics / dcimg
  A Python module for accessing Hamamatsu DCIMG files
  ☆14Updated 2 years ago