Alternatives and similar repositories for read-roi

Users that are interested in read-roi are comparing it to the libraries listed below

• cgohlke / roifile
  Read and write ImageJ ROI format.
  ☆83Updated last week
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆92Updated 2 weeks ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆60Updated last month
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆19Updated 4 years ago
• seung-lab / igneous
  Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
  ☆64Updated last week
• napari / napari-animation
  A napari plugin for making animations
  ☆94Updated 3 weeks ago
• JaneliaSciComp / BigStitcher
  ImgLib2/BDV implementation of Stitching for large datasets
  ☆78Updated 2 months ago
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 4 years ago
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆136Updated 3 weeks ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆39Updated last month
• abcucberkeley / PetaKit5D
  ☆49Updated last month
• haesleinhuepf / stackview
  Interactive image stack viewing in jupyter notebooks based on ipycanvas and ipywidgets
  ☆176Updated last week
• bioimage-io / spec-bioimage-io
  Specification for the bioimage.io model description file.
  ☆21Updated this week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆221Updated last month
• tlambert03 / pycudadecon
  Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy
  ☆71Updated 3 weeks ago
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 3 years ago
• neurobiology-ut / PHILOW
  Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets
  ☆27Updated 11 months ago
• CRBS / cdeep3m
  Please go to https://github.com/CRBS/cdeep3m2 for most recent version
  ☆59Updated 5 years ago
• VolkerH / Lattice_Lightsheet_Deskew_Deconv
  Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data
  ☆26Updated 5 years ago
• CellProfiler / python-bioformats
  Read and write life sciences file formats
  ☆142Updated 7 months ago
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated last year
• haesleinhuepf / BioImageAnalysisNotebooks
  Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more
  ☆153Updated 2 weeks ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆87Updated 3 weeks ago
• lens-biophotonics / dcimg
  A Python module for accessing Hamamatsu DCIMG files
  ☆14Updated 2 years ago
• BiAPoL / napari-clusters-plotter
  A napari plugin for clustering objects according to their properties.
  ☆89Updated last week
• albert597 / TRAILMAP
  ☆46Updated 5 years ago
• bauerdavid / napari-nD-annotator
  ☆38Updated last month
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 3 months ago
• seung-lab / cloud-volume
  Read and write Neuroglancer datasets programmatically.
  ☆170Updated this week
• yfukai / laptrack
  Particle tracking by solving linear assignment problem.
  ☆61Updated last month