hadim / read-roi
Read ROI files .zip or .roi generated with ImageJ.
☆53Updated 2 years ago
Alternatives and similar repositories for read-roi:
Users that are interested in read-roi are comparing it to the libraries listed below
- Read and write ImageJ ROI format.☆71Updated last month
- Tools for distributed alignment of massive images☆81Updated last month
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 4 years ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆119Updated this week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Create movies from series of key-frames in napari.☆37Updated 3 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- ☆45Updated 4 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆25Updated 4 years ago
- Software for the paper "Fast and robust active neuron segmentation in two-photon calcium imaging using spatio-temporal deep learning," Pr…☆64Updated 5 years ago
- ☆31Updated 3 weeks ago
- A deep-learning library for denoising images using Noise2Void and friends (CARE, PN2V, HDN etc.), with a focus on user-experience and doc…☆63Updated this week
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last month
- A napari plugin for making animations☆84Updated 6 months ago
- Utils and convenience functions for large-scale bio-image analysis.☆53Updated last month
- ☆18Updated 2 years ago
- Specification for the bioimage.io model description file.☆19Updated this week
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆63Updated 2 weeks ago
- ☆31Updated 3 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- StarDist plugin for napari☆37Updated 6 months ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- GPU-accelerated general purpose image processing and image analysis in napari☆35Updated 5 months ago
- Automated mitochondrial segmentation and tracking.☆31Updated 3 years ago
- Flow-Registration toolbox for 2P motion compensation☆22Updated 7 months ago
- A library to facilitate machine learning on multi-dimensional images.☆81Updated this week
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 months ago
- Feature extraction for labeled objects in images using regionprops from scikit-image☆50Updated 5 months ago
- Optimize image processing workflows in napari☆17Updated 2 years ago