Read and write ImageJ ROI format.
☆85Feb 11, 2026Updated 3 weeks ago
Alternatives and similar repositories for roifile
Users that are interested in roifile are comparing it to the libraries listed below
Sorting:
- Read ROI files .zip or .roi generated with ImageJ.☆53Jun 1, 2022Updated 3 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆17Jul 7, 2025Updated 8 months ago
- ☆36Mar 22, 2024Updated last year
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 3 months ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆21Nov 24, 2025Updated 3 months ago
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆18Apr 8, 2025Updated 10 months ago
- Read Becker & Hickl SDT files.☆13Feb 9, 2026Updated 3 weeks ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- An R package to detect collective spatio-temporal phenomena☆13Sep 25, 2025Updated 5 months ago
- Read and write TIFF files.☆649Feb 25, 2026Updated last week
- scalable multiscale image pyramids in python☆29Jul 25, 2024Updated last year
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Aug 22, 2024Updated last year
- ☆23Mar 26, 2021Updated 4 years ago
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated 11 months ago
- Resources for teaching/preparing to teach bioimage analysis☆58Feb 25, 2026Updated last week
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated last year
- Creating figures and animations for multi-channel images with a focus on microscopy.☆80Dec 16, 2024Updated last year
- Python module utilizing libCZI for reading Zeiss CZI files.☆47Apr 14, 2025Updated 10 months ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆45Updated this week
- ilastik plugin for napari☆14Updated this week
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 2 months ago
- Browse your OMERO database from within napari.☆40Jan 15, 2026Updated last month
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆20Feb 23, 2026Updated last week
- Track and lineage visualization with btrack and Napari☆45Sep 29, 2025Updated 5 months ago
- Simple, fast-loading, n-dimensional array viewer with minimal dependencies.☆88Feb 7, 2026Updated last month
- A napari plugin for zarr backed OME-NGFF images☆45Updated this week
- Image reading, metadata management, and image writing for Microscopy images in Python☆114Feb 25, 2026Updated last week
- Speed up coding/extending image analysis in Python.☆37Jan 20, 2026Updated last month
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆55Nov 13, 2025Updated 3 months ago
- Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/hi…☆22Jun 21, 2024Updated last year
- A minimal dependency napari plugin giving access to scikit-image functions☆23Sep 3, 2025Updated 6 months ago
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11Jan 22, 2026Updated last month
- 4D reconstruction of developmental trajectories using spherical harmonics☆23Mar 25, 2025Updated 11 months ago
- Python based viewer for large mulit-dimensional datasets.☆20Jan 28, 2020Updated 6 years ago
- Reduce the size of existing CZI-documents by converting them to zstd-compressed CZI documents☆24Dec 17, 2025Updated 2 months ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 4 years ago
- Segment images utilizing pre-trained neural networks as feature extractors☆47Feb 25, 2026Updated last week
- Create movies from series of key-frames in napari.☆38May 24, 2021Updated 4 years ago