Read and write ImageJ ROI format.
☆89Jul 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for roifile
Users that are interested in roifile are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Read ROI files .zip or .roi generated with ImageJ.☆53Jun 1, 2022Updated 4 years ago
- A napari plugin for stitching large multi-positioning datasets in 2/3D+t using multiview-stitcher☆19Jul 26, 2026Updated 3 weeks ago
- 2D and 3D image deconvolution with python☆15Sep 20, 2024Updated last year
- An R package to detect collective spatio-temporal phenomena☆13Sep 25, 2025Updated 10 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆35Aug 22, 2024Updated last year
- Read and write TIFF files.☆662Updated this week
- Python module for registering and fusing multi-view microscopy data☆24Mar 8, 2025Updated last year
- ☆39Mar 22, 2024Updated 2 years ago
- ☆15Apr 1, 2026Updated 4 months ago
- A plugin to read whole slide images within napari.☆21Nov 24, 2025Updated 8 months ago
- Creating figures and animations for multi-channel images with a focus on microscopy.☆82Dec 16, 2024Updated last year
- Resources for teaching/preparing to teach bioimage analysis☆63Aug 6, 2026Updated last week
- Collection of useful (to me) python scripts for interacting with napari☆13Aug 14, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Read Becker & Hickl SDT files.☆14Jul 29, 2026Updated 2 weeks ago
- A napari plugin for making image annotation using feature space of vision transformers and Random Forest classifier☆23Nov 24, 2025Updated 8 months ago
- scalable multiscale image pyramids in python☆29Aug 5, 2026Updated 2 weeks ago
- Image acquisition software for mesoSPIM light-sheet microscopes.☆48Aug 11, 2026Updated last week
- A minimalistic napari plugin to create and save regions of interest and annotations on series of images☆19Apr 8, 2025Updated last year
- Image reading, metadata management, and image writing for Microscopy images in Python☆126Updated this week
- A minimal dependency napari plugin giving access to scikit-image functions☆23Jul 6, 2026Updated last month
- Accelerated CellStitch for 3D labeling of anisotropic image stacks☆15Mar 1, 2026Updated 5 months ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆48Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The computational platform u-signal3D defines a shape-invariant representation of the spatial scales of molecular organization at the cel…☆11May 29, 2026Updated 2 months ago
- Visualizing feature measurements on label images in napari☆10Jul 24, 2024Updated 2 years ago
- Browse your OMERO database from within napari.☆40Aug 1, 2026Updated 2 weeks ago
- An implementation agnostic schema for describing a sequence of events during a multi-dimensional imaging acquisition.☆21Aug 3, 2026Updated 2 weeks ago
- Track and lineage visualization with btrack and Napari☆46Sep 29, 2025Updated 10 months ago
- ilastik plugin for napari☆15Mar 2, 2026Updated 5 months ago
- Segment images utilizing pre-trained neural networks as feature extractors☆52Jul 3, 2026Updated last month
- 🚚 AutoTx 🪄 - a smart background file transfer service for Windows.☆31Jul 8, 2026Updated last month
- Modern Bio-Formats wrapper with clean lazy Python API☆23Jun 25, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆23Mar 26, 2021Updated 5 years ago
- This is an older version of cytosim, a cytoskeleton simulation engine☆29Nov 2, 2021Updated 4 years ago
- Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.☆57Nov 13, 2025Updated 9 months ago
- BIOMERO.analyzer - A python library for easy connecting between OMERO (jobs) and a Slurm cluster☆28Updated this week
- czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html☆14Oct 15, 2025Updated 10 months ago
- Image Cytometry Standard file reading and writing.☆18Jan 5, 2026Updated 7 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆74Aug 3, 2026Updated 2 weeks ago