Alternatives and similar repositories for cellmap-segmentation-challenge

Users that are interested in cellmap-segmentation-challenge are comparing it to the libraries listed below

• volume-em / empanada
  Panoptic segmentation algorithms for 2D and 3D electron microscopy images
  ☆2Updated 2 years ago
• constantinpape / elf
  Utils and convenience functions for large-scale bio-image analysis.
  ☆56Updated last week
• funkelab / lsd
  🌈
  ☆56Updated 2 months ago
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆24Updated 2 years ago
• kreshuklab / MorphoFeatures
  MorphoFeatures code and data
  ☆21Updated 2 years ago
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆96Updated this week
• stegmaierj / Cellpose3D
  3D Extension of the Cellpose Algorithm by Stringer et al., 2021.
  ☆35Updated 2 years ago
• funkey / waterz
  Simple watershed and agglomeration library for affinity graphs.
  ☆22Updated 6 months ago
• volume-em / cem-dataset
  Utilities for building and using the CEM dataset for unsupervised pre-training and downstream tasks.
  ☆28Updated 2 years ago
• seung-lab / DeepEM
  Deep Learning for EM Connectomics
  ☆15Updated 2 years ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated last year
• AllenCell / aics-ml-segmentation
  ☆32Updated 2 years ago
• aelefebv / nellie
  Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy
  ☆70Updated 2 months ago
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆81Updated last month
• weigertlab / trackastra
  ☆72Updated 2 weeks ago
• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆94Updated 2 weeks ago
• kirchhausenlab / incasem
  Automated Segmentation of cellular substructures in Electron Microscopy
  ☆17Updated 2 months ago
• GuillaumeMougeot / biom3d
  Easy Volumetric Segmentation with Deep Learning
  ☆26Updated 3 weeks ago
• funkelab / motile
  Multi-Object Tracker using Integer Linear Equations
  ☆31Updated 2 months ago
• constantinpape / cluster_tools
  Distributed segmentation for bio-image-analysis
  ☆38Updated 3 weeks ago
• computational-cell-analytics / medico-sam
  Segment Anything for Medical Imaging
  ☆19Updated this week
• stardist / augmend
  simple package for augmentation of n-dimensional arrays
  ☆32Updated last year
• peng-lab / leonardo_toolset
  ☆14Updated last week
• lmbneuron / D-LMBmap
  ☆37Updated last year
• betaseg / cellsketch
  ☆10Updated last year
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D time lapse images.
  ☆59Updated last month
• AllenCell / aics-segmentation
  Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow
  ☆26Updated 10 months ago
• bioimage-io / bioimage.io
  Website for the BioImage Model zoo -- a model zoo for bioimage analysis.
  ☆60Updated 2 months ago
• reimerlab / NEURD
  NEURD: A mesh decomposition framework for automated proofreading and morphological analysis of neuronal EM reconstructions
  ☆17Updated 3 weeks ago