mgymrek / pybamview
Browser based application for viewing bam alignments
☆56Updated 8 years ago
Alternatives and similar repositories for pybamview:
Users that are interested in pybamview are comparing it to the libraries listed below
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆51Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆75Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 5 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 2 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 9 months ago
- A tool to benchmark mappers and different parameters within minutes☆43Updated 5 years ago
- An awk-like VCF parser☆56Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- The integrated pipeline for Indel detection☆17Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- for detecting internal tandem duplication from genome sequence data.☆11Updated 5 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- ☆46Updated 5 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago