mgymrek / pybamviewLinks
Browser based application for viewing bam alignments
☆56Updated 8 years ago
Alternatives and similar repositories for pybamview
Users that are interested in pybamview are comparing it to the libraries listed below
Sorting:
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Read visualizer for structural variants☆84Updated 6 years ago
- SV detection from paired end reads mapping☆38Updated 15 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Assembly Based ReAligner☆74Updated 7 years ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- ☆54Updated 5 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Maximum likelihood demultiplexing☆47Updated 5 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- The integrated pipeline for Indel detection☆17Updated 7 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago