mgymrek / pybamviewLinks
Browser based application for viewing bam alignments
☆56Updated 8 years ago
Alternatives and similar repositories for pybamview
Users that are interested in pybamview are comparing it to the libraries listed below
Sorting:
- a pileup library that embraces the huge☆43Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆77Updated last year
- A method to identify structural variation from sequencing data in target regions☆31Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- High-performance error correction for Illumina resequencing data☆71Updated 9 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 5 months ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Read visualizer for structural variants☆84Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- The integrated pipeline for Indel detection☆17Updated 7 years ago
- Bioinformatics tool outputs converter to JSON or YAML☆36Updated 6 months ago
- ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to ama…☆21Updated 2 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Assembly Based ReAligner☆73Updated 7 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- Structural Variant Index☆74Updated 5 months ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated last year
- SV detection from paired end reads mapping☆38Updated 14 years ago
- Tools for bam file processing☆55Updated 10 years ago
- 10x Genomics Reads Simulator☆45Updated last year